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[![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.18995.svg)](http://dx.doi.org/10.5281/zenodo.18995)

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ncbi_taxonomy

downloads the taxonomy database from NCBI

reads and standardize the data in python

... and ...

export databases as pickle

links and index the data

exports indexes and links as pickle


... or ...

exports as sql using sqlalchemy (standard sqlite but any other supported format could be used)

dump the sql to a .sql file (smaller when compressed)

dump the schema

dump the columns as tsv files