Commit 12a5fd73 authored by Patino Medina, Laura's avatar Patino Medina, Laura
Browse files

Replace GOenrichment_proj.R

parent 0721044d
...@@ -95,8 +95,8 @@ for(leaf in sample_names[2:length(sample_names)]){ ...@@ -95,8 +95,8 @@ for(leaf in sample_names[2:length(sample_names)]){
#GOgraph -> with raw pval #GOgraph -> with raw pval
par(cex = 0.3) par(cex = 0.3)
showSigOfNodes(GOdata_sample, score(fisher_sample), firstSigNodes = 5, useInfo = 'all') showSigOfNodes(GOdata_sample, score(fisher_sample), firstSigNodes = 5, useInfo = 'all')
printGraph(GOdata_sample, fisher_sample, firstSigNodes = 5, fn.prefix = current_leaf, useInfo = "def", pdfSW = TRUE)#termsP.value named vector of p-values. printGraph(GOdata_sample, fisher_sample, firstSigNodes = 5, fn.prefix = current_leaf, useInfo = "all", pdfSW = TRUE)#termsP.value named vector of p-values.
#dev.off()
#write table with information per leaf #write table with information per leaf
table = paste(current_leaf,"txt",sep=".") table = paste(current_leaf,"txt",sep=".")
......
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