Replace GOenrichment_proj.R

scripts/GOenrichment_proj.R

@@ -95,8 +95,8 @@ for(leaf in sample_names[2:length(sample_names)]){
   #GOgraph -> with raw pval
   par(cex = 0.3)
   showSigOfNodes(GOdata_sample, score(fisher_sample), firstSigNodes = 5, useInfo = 'all')
-  printGraph(GOdata_sample, fisher_sample, firstSigNodes = 5, fn.prefix = current_leaf, useInfo = "def", pdfSW = TRUE)#termsP.value	named vector of p-values.
-  #dev.off()
+  printGraph(GOdata_sample, fisher_sample, firstSigNodes = 5, fn.prefix = current_leaf, useInfo = "all", pdfSW = TRUE)#termsP.value	named vector of p-values.
+  
   
   #write table with information per leaf
   table = paste(current_leaf,"txt",sep=".")