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add-group-info-default-groups
c78e6020
·
-H/-G in group_info are now optional, default is all_homology_groups in gene_classification.
·
Jun 09, 2023
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fix_ci_cd_mamb
666cf64d
·
check two locations for missing .so file
·
Jun 09, 2023
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merge_phased_with_develop
69587fd5
·
put mamba back
·
Jun 09, 2023
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develop
protected
53ac0156
·
Merge branch 'fix-filename-in-rscript' into 'develop'
·
Jun 08, 2023
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pantools_v4
default
protected
283759d5
·
Merge branch 'release_v4.2.1' into 'pantools_v4'
·
Jun 05, 2023
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update_CICD_data
01e6fb70
·
add scp install to CI/CD
·
May 25, 2023
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update_dependencies_pantools
e8c6a98c
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update plugins in pom.xml
·
May 17, 2023
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add_promoter_sequence_analysis
0e397a8c
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skip writing sequence if has length 0 for add_variants to prevent mistakes
·
May 16, 2023
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add_gfa_export
d64d124d
·
fixed proper path writing for GFA
·
May 05, 2023
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eggnog_fix
414d9f0a
·
handling changed column name in eggnog-mapper output
·
Apr 26, 2023
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phased_pangenomics
c6f4fd13
·
added documentation gene_classification
·
Apr 25, 2023
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get_hm_groups_from_genes_of_interest
3ae281b4
·
Added warning if a genes was not found in the graph db
·
Apr 14, 2023
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add-logging
62a53634
·
Added one more newline before final logging in pantools group
·
Apr 03, 2023
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remove_genomes
acf5a6a0
·
When removing genomes, also try to merge when a color is removed from an edge.
·
Mar 31, 2023
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single-seqalign-class
9e606db8
·
Improved SequenceAlignment test and re-enabled pangenome tests.
·
Mar 30, 2023
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add_panva_queries
78a70f43
·
Added panva utility function to get similarity scores fro the graph
·
Mar 27, 2023
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automatic_skip_core_phylogeny_fix
f9ac1240
·
Resolved issue in core_phylogeny when skipping genomes
·
Mar 09, 2023
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split_classification_busco
3ca33794
·
Removed v3 code artifacts, added log4j to busco_protein
·
Mar 03, 2023
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add-phenotype-to-consensus-tree
69122453
·
Added --phenotype flag to ConsensusTree.java
·
Feb 20, 2023
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add-progress-bars
fd67c635
·
Reformatted Classification.countCogForMetrics and added a progress bar
·
Jan 30, 2023
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