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fix_blast_output_file
9b874938
·
update changelog
·
Sep 13, 2024
fix_add_functions_panproteome
bb7eb251
·
update changelog
·
Sep 13, 2024
fix_add_genomes_kmc_tools
5fb33034
·
update changelog
·
Sep 13, 2024
add_gfa_export
6bdd7219
·
update test because i decided that blocks supported by only one it should be discarded
·
Aug 16, 2024
develop
protected
6c9afe57
·
Merge branch 'update_missing_parts_in_documentation' into 'develop'
·
Aug 15, 2024
update_dependencies_pantools
1b8ee752
·
Merge branch 'develop' into update_dependencies_pantools
·
Aug 12, 2024
add_gfa_build_pangenome
f4ea67d4
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Merge branch 'add_gfa_export' into add_gfa_build_pangenome
·
Aug 12, 2024
try_create_export_json_entire_pangenome
f011ff5c
·
write not very well scalable code for export_json for entire pangenome to GSE v0.1
·
Jun 27, 2024
fix_kmer_pangenome_structure
5f023962
·
rephrase loop/thread to jobs where needed for pangenome_structure
·
Jun 26, 2024
refactor_homology_grouping
5f84ef33
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try increasing runtime finding intersection by skipping hashmap look-up
·
Jun 21, 2024
fix_integer_overflow_kmer_structure
6fec20b5
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also try fixing integer overflow kmer_classification
·
Jun 17, 2024
update_tutorial
b13e8556
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removed mamba frontend flags from snakemake commands since mamba is the default
·
May 12, 2024
validate_feature_strands
192bfa73
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Feature nodes are no longer made if the strand value does not match [+-],...
·
Apr 26, 2024
test_mcl_files
453f713a
·
removed mcl input and output file cleanup
·
Apr 18, 2024
separate_connect_pangenome
c4610798
·
Separated num_genomes property missing exception from pangenome node missing exception.
·
Feb 13, 2024
fix_inconsistent_homology_grouping
cb472d21
·
fix similarity calculation for different ordering of proteins by breaking ties...
·
Jan 02, 2024
remove_unused_phylogeny_functions
7c448244
·
remove unused phylogeny functions
·
Dec 15, 2023
pantools_v4
default
protected
f2cfcd3c
·
Merge branch 'release_v4.3.1' into 'pantools_v4'
·
Dec 08, 2023
playing_around_with_cicd
efde0204
·
print micromamba environments
·
Dec 07, 2023
phased_pangenomics_NW_blosum
67283303
·
NW algorithm now makes use of BLOSUM files
·
Oct 06, 2023
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