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phased_pangenomics_restructure
53d4a3ba
·
lowered index by one for correct array index.
·
Sep 21, 2023
fix-core-phylogeny-mode
2ef0ac44
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Fixed --mode argument from core_phylogeny being ignored
·
Jun 13, 2023
add_promoter_sequence_analysis
0e397a8c
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skip writing sequence if has length 0 for add_variants to prevent mistakes
·
May 16, 2023
eggnog_fix
414d9f0a
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handling changed column name in eggnog-mapper output
·
Apr 26, 2023
get_hm_groups_from_genes_of_interest
3ae281b4
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Added warning if a genes was not found in the graph db
·
Apr 14, 2023
add-logging
62a53634
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Added one more newline before final logging in pantools group
·
Apr 03, 2023
remove_genomes
acf5a6a0
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When removing genomes, also try to merge when a color is removed from an edge.
·
Mar 31, 2023
single-seqalign-class
9e606db8
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Improved SequenceAlignment test and re-enabled pangenome tests.
·
Mar 30, 2023
add_panva_queries
78a70f43
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Added panva utility function to get similarity scores fro the graph
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Mar 27, 2023
automatic_skip_core_phylogeny_fix
f9ac1240
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Resolved issue in core_phylogeny when skipping genomes
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Mar 09, 2023
split_classification_busco
3ca33794
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Removed v3 code artifacts, added log4j to busco_protein
·
Mar 03, 2023
add-phenotype-to-consensus-tree
69122453
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Added --phenotype flag to ConsensusTree.java
·
Feb 20, 2023
add-progress-bars
fd67c635
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Reformatted Classification.countCogForMetrics and added a progress bar
·
Jan 30, 2023
release_v4.0.0
db13fd1a
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Removed copied reference to read the docs manual
·
Dec 21, 2022
refactor-retrieve-features
aeaa0ab5
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Should have gone with
f82ffb0a
.
·
Dec 21, 2022
pantools_v3
protected
5f8671bc
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Merge branch 'release' into 'pantools_v3'
·
Dec 01, 2022
release
db71492e
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remove old v3.4 jar from release branch
·
Nov 29, 2022
pantools_v3.1
protected
4b27c1db
·
deleted log
·
Nov 28, 2022
docker
058b2ca2
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Remove ASTER compilation from Dockerfile, already provided with conda.
·
Nov 03, 2022
fix-indexing-error-add_annotations
d6849a35
·
Made getMrnaSequence return an empty string as soon as an exception wat...
·
Oct 21, 2022
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