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add-logging
62a53634
·
Added one more newline before final logging in pantools group
·
Apr 03, 2023
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remove_genomes
acf5a6a0
·
When removing genomes, also try to merge when a color is removed from an edge.
·
Mar 31, 2023
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single-seqalign-class
9e606db8
·
Improved SequenceAlignment test and re-enabled pangenome tests.
·
Mar 30, 2023
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add_panva_queries
78a70f43
·
Added panva utility function to get similarity scores fro the graph
·
Mar 27, 2023
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automatic_skip_core_phylogeny_fix
f9ac1240
·
Resolved issue in core_phylogeny when skipping genomes
·
Mar 09, 2023
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split_classification_busco
3ca33794
·
Removed v3 code artifacts, added log4j to busco_protein
·
Mar 03, 2023
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add-phenotype-to-consensus-tree
69122453
·
Added --phenotype flag to ConsensusTree.java
·
Feb 20, 2023
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add-progress-bars
fd67c635
·
Reformatted Classification.countCogForMetrics and added a progress bar
·
Jan 30, 2023
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release_v4.0.0
db13fd1a
·
Removed copied reference to read the docs manual
·
Dec 21, 2022
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refactor-retrieve-features
aeaa0ab5
·
Should have gone with
f82ffb0a
.
·
Dec 21, 2022
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pantools_v3
protected
5f8671bc
·
Merge branch 'release' into 'pantools_v3'
·
Dec 01, 2022
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release
db71492e
·
remove old v3.4 jar from release branch
·
Nov 29, 2022
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pantools_v3.1
protected
4b27c1db
·
deleted log
·
Nov 28, 2022
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docker
058b2ca2
·
Remove ASTER compilation from Dockerfile, already provided with conda.
·
Nov 03, 2022
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fix-indexing-error-add_annotations
d6849a35
·
Made getMrnaSequence return an empty string as soon as an exception wat...
·
Oct 21, 2022
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add_RG_option
50847454
·
added comments
·
Oct 05, 2022
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fasta-validation
ca6713fe
·
Merge branch 'add-custom-jakarta-constraint-tests' into 'master'
·
Sep 23, 2022
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add-scoring-matrices-to-resources
34a90915
·
Added missing conversion to Globals for --blosum
·
Sep 22, 2022
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remove_skiparrays
1b7502e1
·
next bit of removing create_skip_arrays.java (NB: does not compile)
·
Sep 19, 2022
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remove-url-validation
944f2f48
·
Remove URL validation with com.* package, replace with URI creation.
·
Aug 24, 2022
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