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bioinformatics
PanTools
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pantools_v1 protected

279b8995 · Updated README · Oct 11, 2019

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pantools_v2 merged protected

2bd17f67 · Added LICENSE · Oct 12, 2019

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pantools_v3.2 protected

067c8993 · Merge branch 'master' into pantools_v3.2 · Dec 21, 2021

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optimized-build-pangenome

fa46e477 · Add mapping validation to end-to-end test. · Apr 19, 2022

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optimized-map

72bbc6ac · Tiny documentation fix. · May 10, 2022

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java-11

eae67b68 · Limit git clone depth to 1 to reduce git clone time. · Jun 16, 2022

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refactor-check-if-nucleotide-sequence

2936e36d · Refactor pre-flight FASTA checks method into separate methods. · Jun 24, 2022

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remove-url-validation

944f2f48 · Remove URL validation with com.* package, replace with URI creation. · Aug 24, 2022

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remove_skiparrays

1b7502e1 · next bit of removing create_skip_arrays.java (NB: does not compile) · Sep 19, 2022

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add-scoring-matrices-to-resources

34a90915 · Added missing conversion to Globals for --blosum · Sep 22, 2022

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fasta-validation merged

ca6713fe · Merge branch 'add-custom-jakarta-constraint-tests' into 'master' · Sep 23, 2022

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add_RG_option

50847454 · added comments · Oct 05, 2022

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fix-indexing-error-add_annotations

d6849a35 · Made getMrnaSequence return an empty string as soon as an exception wat... · Oct 21, 2022

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docker

058b2ca2 · Remove ASTER compilation from Dockerfile, already provided with conda. · Nov 03, 2022

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pantools_v3.1 protected

4b27c1db · deleted log · Nov 28, 2022

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release

db71492e · remove old v3.4 jar from release branch · Nov 29, 2022

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pantools_v3 protected

5f8671bc · Merge branch 'release' into 'pantools_v3' · Dec 01, 2022

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refactor-retrieve-features

aeaa0ab5 · Should have gone with f82ffb0a . · Dec 21, 2022

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release_v4.0.0 merged

db13fd1a · Removed copied reference to read the docs manual · Dec 21, 2022

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add-progress-bars

fd67c635 · Reformatted Classification.countCogForMetrics and added a progress bar · Jan 30, 2023

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