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add-phenotype-to-consensus-tree
69122453
·
Added --phenotype flag to ConsensusTree.java
·
Feb 20, 2023
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split_classification_busco
3ca33794
·
Removed v3 code artifacts, added log4j to busco_protein
·
Mar 03, 2023
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automatic_skip_core_phylogeny_fix
f9ac1240
·
Resolved issue in core_phylogeny when skipping genomes
·
Mar 09, 2023
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add_panva_queries
78a70f43
·
Added panva utility function to get similarity scores fro the graph
·
Mar 27, 2023
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single-seqalign-class
9e606db8
·
Improved SequenceAlignment test and re-enabled pangenome tests.
·
Mar 30, 2023
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remove_genomes
acf5a6a0
·
When removing genomes, also try to merge when a color is removed from an edge.
·
Mar 31, 2023
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add-logging
62a53634
·
Added one more newline before final logging in pantools group
·
Apr 03, 2023
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get_hm_groups_from_genes_of_interest
3ae281b4
·
Added warning if a genes was not found in the graph db
·
Apr 14, 2023
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eggnog_fix
414d9f0a
·
handling changed column name in eggnog-mapper output
·
Apr 26, 2023
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add_promoter_sequence_analysis
0e397a8c
·
skip writing sequence if has length 0 for add_variants to prevent mistakes
·
May 16, 2023
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fix-core-phylogeny-mode
2ef0ac44
·
Fixed --mode argument from core_phylogeny being ignored
·
Jun 13, 2023
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phased_pangenomics_restructure
53d4a3ba
·
lowered index by one for correct array index.
·
Sep 21, 2023
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phased_pangenomics_NW_blosum
67283303
·
NW algorithm now makes use of BLOSUM files
·
Oct 06, 2023
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playing_around_with_cicd
efde0204
·
print micromamba environments
·
Dec 07, 2023
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pantools_v4
default
protected
f2cfcd3c
·
Merge branch 'release_v4.3.1' into 'pantools_v4'
·
Dec 08, 2023
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remove_unused_phylogeny_functions
7c448244
·
remove unused phylogeny functions
·
Dec 15, 2023
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update_dependencies_pantools
cb14c5d2
·
updating pangenome node retrieval for neo4j 5
·
Dec 18, 2023
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refactor_homology_grouping
230c235f
·
add hg name chagne to changelog
·
Dec 22, 2023
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fix_inconsistent_homology_grouping
cb472d21
·
fix similarity calculation for different ordering of proteins by breaking ties...
·
Jan 02, 2024
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update_tutorial
0dd620ac
·
updated tutorial header titles in index
·
Jan 09, 2024
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