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Reverse completement regions in a --regions-file file now require a minus symbol

Jonkheer, Eef requested to merge retrieve_regions into master

Include a minus symbol behind the region file given by --region-file to retrieve the reverse complement. Previously, the user had to include 'rv'.

Was tested on using msa_of_regions on the lettuce_plastid_pangenome with the following file.

3 1 29210 30325 -
7 1 29119 30233 -
5 1 29008 30121 -
11 1 29206 30331 -
8 1 29197 30311 -
9 1 28960 30080 -
2 1 29038 30152 -
1 1 5188 6302 -
13 1 29049 30177 -
12 1 30149 31263 -
6 1 29264 30378 -
4 1 29201 30315 -
10 1 30322 31448 -

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