Skip to content

Draft: construct pangenome database from GFA

Workum, Dirk-Jan van requested to merge add_gfa_build_pangenome into add_gfa_export

Related to !147, I would like to not only go from pantools_DB -> GFA but also vice versa. This merge request collects my tries of doing that. It's marked as draft for now because I'm not sure if I'll use this code in the end.


  • Fix kmer index
  • Make working on cyclic graphs
  • Check correctness on both small and large graphs
Edited by Workum, Dirk-Jan van

Merge request reports