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Fix adding annotations

Workum, Dirk-Jan van requested to merge fix_adding_annotations into master

We came across several issues with adding annotations with the current master branch of pantools:

  • Gff3Codec is quite verbose in printing to the screen; we will set this to only printing erros
  • TribbleException is not handled when parsing a gff file
  • When adding annotations for very fragmented genomes, runtime increases a lot
  • not all feature properties "locus_tag" and "name" are replaced by String arrays yet
Edited by Workum, Dirk-Jan van

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