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Created date
Restore the use of MSA for phylogenetics
4 of 4 checklist items completed
!195
· created
Sep 05, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
21
updated
Oct 03, 2023
Fix distinct count kmers in kmer_classification for subsets of genomes
!196
· created
Sep 22, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Sep 22, 2023
Fixed ignoring untrimmed MSA for core_phylogeny and consensus_tree
!197
· created
Oct 03, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
4
updated
Oct 06, 2023
Add subgraph retrieval to GFA import/export
!199
· created
Oct 17, 2023
by
Workum, Dirk-Jan van
add_gfa_export
Merged
0
updated
Nov 14, 2023
Fix mode case insensitivity for ANI
!200
· created
Nov 13, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Nov 14, 2023
Documentation shuffle
!201
· created
Nov 14, 2023
by
Robin van Esch
develop
Merged
Approved
51
updated
Nov 23, 2023
Msa var inf positions optimalization
!202
· created
Nov 16, 2023
by
Robin van Esch
develop
Merged
Approved
5
updated
Nov 24, 2023
update KMC to version >=3.1.0
!203
· created
Nov 20, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
4
updated
Nov 21, 2023
update reference version for ci pipeline
!204
· created
Nov 21, 2023
by
Robin van Esch
develop
Merged
Approved
1
updated
Nov 21, 2023
Fix `--seed` for `pantools pangenome_structure`
!205
· created
Nov 21, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Nov 21, 2023
Fix phenotype overview order
!206
· created
Nov 21, 2023
by
Robin van Esch
develop
Merged
0
updated
Nov 21, 2023
Add phasing functionalities and variation to pantools v4
!207
· created
Nov 23, 2023
by
Robin van Esch
Merged
Approved
0
updated
Nov 23, 2023
merge Release v4.3.0 back to develop
!208
· created
Nov 23, 2023
by
Robin van Esch
develop
Merged
Approved
0
updated
Nov 23, 2023
Replaced all remaining occurrences of move_grouping to deactivate_grouping.
!209
· created
Nov 23, 2023
by
Robin van Esch
Merged
Approved
0
updated
Nov 23, 2023
update develop with hotfix
!210
· created
Nov 23, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Nov 23, 2023
Add test to CI/CD for pantools --version and pantools --help
!211
· created
Nov 23, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Nov 23, 2023
Fix var inf csv file
!212
· created
Nov 24, 2023
by
Workum, Dirk-Jan van
Merged
Approved
0
updated
Nov 28, 2023
Bioconda install update
!213
· created
Nov 27, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Nov 27, 2023
Revert "Merge branch 'fix_var_inf_csv_file' into 'pantools_v4'"
!214
· created
Nov 28, 2023
by
Workum, Dirk-Jan van
Merged
0
updated
Nov 28, 2023
do merge request !212 again
!215
· created
Nov 28, 2023
by
Workum, Dirk-Jan van
develop
Merged
0
updated
Nov 28, 2023
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