Merge requests · bioinformatics / PanTools

Added read the docs documentation 1 of 2 checklist items completed

!50 · created Jul 05, 2022 by Esch, Roel van master
- MERGED
- Approved
- 1
updated Jul 21, 2022
Update README.md

!49 · created Jul 05, 2022 by Jonkheer, Eef master
- MERGED
- 0
updated Jul 05, 2022
Added script to download, check, and unpack interpro dataset.

!48 · created Jul 01, 2022 by Lankveld, Thijs van pantools_v3.1
- MERGED
- Approved
- 2
updated Jul 20, 2022
Added script to download, check, and unpack interpro dataset.

!47 · created Jul 01, 2022 by Lankveld, Thijs van pantools_v3
- MERGED
- Approved
- 13
updated Jul 20, 2022
Fix phase information of CDS nodes for translation of mRNA to protein

!46 · created Jun 30, 2022 by Workum, Dirk-Jan van master
- MERGED
- Approved
- 1
updated Jul 14, 2022
Fixed incorrect naming in header of 'kmer_classification_overview.csv'

!45 · created Jun 24, 2022 by Jonkheer, Eef master
- MERGED
- Approved
- 0
updated Jun 24, 2022
Bugfix locate jar

!44 · created Jun 21, 2022 by Workum, Dirk-Jan van master
- MERGED
- 1
- 1
updated Jun 21, 2022
Added Picocli argument parsing and beans validation in cli package. 4 of 4 checklist items completed

!43 · created Jun 14, 2022 by Esch, Roel van master
- MERGED
- Approved
- 1
- 140
updated Aug 18, 2022
Update CHANGELOG.md

!42 · created May 19, 2022 by Jonkheer, Eef master
- MERGED
- 0
updated May 19, 2022
Add CI pipeline

!41 · created May 13, 2022 by Moed, Matthijs master
- MERGED
- Approved
- 0
updated May 13, 2022
Colourblind friendly plots

!40 · created May 04, 2022 by Jonkheer, Eef master
- MERGED
- 0
updated May 04, 2022
removing identifiers_incorrect_for_fasttree and uniquifying all sequences that are input for MSA

!39 · created Apr 05, 2022 by Workum, Dirk-Jan van master
- MERGED
- Approved
- 0
updated Apr 06, 2022
replace manual gff parsing by htsjdk gff parsing for add_annotations 6 of 6 checklist items completed

!38 · created Mar 29, 2022 by Workum, Dirk-Jan van master
- MERGED
- Approved
- 1
- 1
updated Jun 21, 2022
make ignoring of polytomies default for ASTRAL-PRO

!37 · created Mar 28, 2022 by Workum, Dirk-Jan van master
- MERGED
- Approved
- 1
updated Mar 29, 2022
High freq kmer classification

!36 · created Mar 25, 2022 by Jonkheer, Eef master
- MERGED
- Approved
- 0
updated Mar 25, 2022
let core_snp_tree search for alignment with updated msaNames variable instead...

!35 · created Mar 14, 2022 by Workum, Dirk-Jan van master
- MERGED
- Approved
- 0
updated Mar 18, 2022
small improvement to running fasttree

!34 · created Mar 09, 2022 by Workum, Dirk-Jan van master
- MERGED
- Approved
- 0
updated Mar 09, 2022
Delete NetBeans-specific files and directories. Close #9.

!33 · created Feb 24, 2022 by Moed, Matthijs master
- MERGED
- Approved
- 0
updated Feb 25, 2022
Rollback annotation when annotation unsuccessful

!32 · created Feb 22, 2022 by Jonkheer, Eef master
- MERGED
- Approved
- 0
updated Feb 22, 2022
Hotfix msa protein alignment trees

!31 · created Feb 18, 2022 by Workum, Dirk-Jan van master
- MERGED
- Approved
- 0
updated Feb 18, 2022