Commit 749d731c authored by Terlouw, Barbara's avatar Terlouw, Barbara
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Update README.md

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# Turterra
A portal for protein families
Turterra is a portal for analysing protein families. It consists of two main parts: turterra, which runs a web portal from a folder tree, and turterra-build, which creates any files in the folder tree that may be missing from a .fasta file and a directory containing templates for homology modelling.
## Installation
Turterra and turterra-build are installed together as follows:
First, we recommend you install [Anaconda](https://www.anaconda.com/products/individual-b) or [Miniconda](https://docs.conda.io/en/latest/miniconda.html). Then, create a new conda environment for turterra and activate it:
```sh
conda create -n turterra python=3.9
conda activate turterra
```
Next, clone the turterra repository into a location of your choice, navigate to the folder, and install turterra.
```sh
conda install -c bioconda epa-ng hmmer muscle fasttree
git clone https://github.com/TurtleTools/turterra.git
cd turterra
pip install .
bin/turterra
```
The majority of turterra's dependencies are installed through the provided setup.py file. However, some dependencies will need to be installed through conda.
```sh
conda install -c bioconda epa-ng hmmer muscle fasttree
```
Congratulations! Turterra was installed!
##Turterra folder architecture
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