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The script focuses on assessing tree vitality trends in urban areas of the Netherlands using high-resolution satellite data and vegetation indices. It employs tree segmentation, trend analysis with weighted linear regression, and classification based on slope values. The methodology enables scalable monitoring of tree health and stress, providing valuable insights for urban forestry management and planning.

A package that prepare video recordings to be used by deeplabcut (simple 2D/3D tracking, cropping and stitching). Then use deeplabcut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

CNN methods that estimate the diameter of the crop, even when it's occluded.

BAIT - a tool for breakpoint analysis and inference of time series

EleQTL (WormQTL2) dataset preparation scripts

video machinelearning using yolov3 on windows 10

Generic project for public access containers

This project is containing some code and data for the tutorial on 3D plant phenotyping at the Summerschool on Application of Machine Learning in Plant Sciences, 12–16 September 2022, Einsiedeln, Switzerland.

Multiple protein structure alignment and feature extraction suite

This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.

Project for ACT module

Generating novel and unique SMILES molecules using BIMODAL model.

An intermediate template repository for python projects