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PanTools, WUR Bioinformatics
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This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.
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Biosynthetic Genes Similarity Clustering and Prospecting Engine.
Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)
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Repository for Python raster GIS library with low memory requirements
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CNN methods that estimate the diameter of the crop, even when it's occluded.
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Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.
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EleQTL (WormQTL2) dataset preparation scripts
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Basic RMarkdown/hugo website for the Open Science Community Wageningen (OSC-W) using GitLab Pages.
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video machinelearning using yolov3 on windows 10
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Template for WUR beamer presentations, based on http://www.petervanbeveren.eu/latex/
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Generic project for public access containers
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