GitLab

PanTools, WUR Bioinformatics

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)

Repository for Python raster GIS library with low memory requirements

This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.

Basic tips for Git and GitLab

Public access to WoSIS standardised data (ISRIC, WDC Soils)

Various code related to the Landschapsmonitorproject Openheid indicator. Project members: Wim van Nieuwenhuizen (PM), Janien vd Greft, Henk Meeuwsen & Hans Roelofsen

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

CNN methods that estimate the diameter of the crop, even when it's occluded.

Python models and scripts used for analysing geospatial data for the 'Natuurrapportage 2019' for the province of Zeeland. Made by Hans Roelofsen, team Biodiversiteit & Beleid, Wageningen Environmental Research

Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.

The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.