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Decrypt AES-128 encrypted strings from an AWX pg_dump.

B4F individual tracking for dairy cattle. Created on April, 15, 2021 by Ines Adriaens

BAIT - a tool for breakpoint analysis and inference of time series

Detect specific sequences in nanopore squiggles, no basecalling required

Scripts and files for data preparation

Scripts and files for data analysis of dataset 1 (by Roxann) - behaviour and spatial data

Repo for dataset 2 (milk production and activity from 10 farms)

Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard index, a modified Domain Duplicate Score and the Goodman-Kruskal gamma function)

Pipeline to rank multiple putative BGC assemblies as those generated by biosyntheticSpades when there are multiple possible paths in the assembly graph. Code is derived by an early version of BiG-SCAPE [https://git.wur.nl/medema-group/BiG-SCAPE]

This software builds upon BirdNet-Analyzer for further analysis of detected bird species and builds a dash board for visualizing species at varios temporal scales.