Explore projects
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The script focuses on assessing tree vitality trends in urban areas of the Netherlands using high-resolution satellite data and vegetation indices. It employs tree segmentation, trend analysis with weighted linear regression, and classification based on slope values. The methodology enables scalable monitoring of tree health and stress, providing valuable insights for urban forestry management and planning.
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Deep Learning Tools for Marine Ecosystem Monitoring / Turtle detection
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Durairaj, Janani / Turterra
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Scripts to extract host capped leader sequences from Nicotiana benthamiana and TSWV
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Haplotype estimation tool for polyploids using NGS data of related individuals
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Source-code for the training of the deep-learning algorithms (yolov5 and efficientnet)
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Advanced bioinformatics groups assignment period 2 2019-2020
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Invite / Tomato Trait Detection Application
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Scripts used in my Master thesis project on calling homopolymers in nanopore data using neural networks.
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This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.
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Data and code for the summerschool Image Processing for Plant Phenotyping
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This project is containing some code and data for the tutorial on 3D plant phenotyping at the Summerschool on Application of Machine Learning in Plant Sciences, 12–16 September 2022, Einsiedeln, Switzerland.
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