Explore projects
-
-
Hoek, Steven / lmgeo
OtherRepository for Python raster GIS library with low memory requirements
Updated -
UpdatedUpdated
-
BIF code templates / python-templates / Python Template Mini
GNU General Public License v3.0 or laterA simple template repository for python projects
Updated -
Multi Reclass Tool for geospatial rasters.
Updated -
Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.
The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.
Topics: PythonUpdated -
-
A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)
Updated -
Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.
Updated -
This project is containing some code and data for the tutorial on 3D plant phenotyping at the Summerschool on Application of Machine Learning in Plant Sciences, 12–16 September 2022, Einsiedeln, Switzerland.
Updated -
FoodInformatics / msx-tool
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
Durairaj, Janani / caretta
BSD 3-Clause "New" or "Revised" LicenseMultiple protein structure alignment and feature extraction suite
Updated -
This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.
Updated -
-
BIF code templates / python-templates / Python Template Midi
GNU General Public License v3.0 or laterAn intermediate template repository for python projects
Updated -
BIF code templates / python-templates / Python Template Maxi
GNU General Public License v3.0 or laterAn advanced template repository for python projects
Updated -
Updated
-
Updated