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HPC Deployment toolbox used at WUR for Anunna

This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.

Basic definition files for containers

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

CNN methods that estimate the diameter of the crop, even when it's occluded.

CatchCam is the software of the Catchcam hardware

generic python modules and utilities

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard index, a modified Domain Duplicate Score and the Goodman-Kruskal gamma function)

Series of scripts developed part of the Rationally designed microbiomes project.

MGnify UHGG from EBI integration with SAPP conversion

Exercise 2 Stijn and Cipo (Marco B. - If running makes no sense)