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HPC Deployment toolbox used at WUR for Anunna

Basic definition files for containers

This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

CNN methods that estimate the diameter of the crop, even when it's occluded.

Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.

Happy - Haplotype assembly using Next-generation Sequencing (NGS) reads.

Using the a sequence of human poses and object category that is being moved by the person, for a given Scenario, this module generates model to predict the activity carried out by the person.

Analysis code repository for the minor thesis project at BIF group. Topic: Using machine learning to predict underlying factors for plant meiotic recombination rate variation Supervisor: Aalt-Jan van Dijk

Seq2species fork adapted to my thesis

Management Strategy Evaluation for Indian Ocean swordfish (SWO)