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This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.

HPC Deployment toolbox used at WUR for Anunna

Basic definition files for containers

CNN methods that estimate the diameter of the crop, even when it's occluded.

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Source-code for the deployment of the disease detection system (smart-camera)

Source-code for the training of the deep-learning algorithms (yolov5 and efficientnet)

Spark standalone clusters on SLURM

A pipeline to align multiple whole genomes

Code and data for DOREN project; relation between vegetation growth and nitrogen deposition. By Hans Roelofsen, Wieger Wamelink, WEnR, team Biodiversiteit & Beleid. September 2019.