Merge requests · bioinformatics

Increase time to get I/O to work for MCL

pantools!248 · created Dec 06, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Dec 09, 2024
Fix MCL long runtime 3 of 3 checklist items completed

pantools!246 · created Dec 02, 2024 by Workum, Dirk-Jan van develop
- Merged
- 3
- Approved
updated Dec 06, 2024
Fix CI/CD pyopenssl error

pantools!247 · created Dec 02, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Dec 02, 2024
Add locations to function nodes in graph

pantools!245 · created Nov 01, 2024 by Workum, Dirk-Jan van develop
- Merged
- 2
- Approved
updated Nov 01, 2024
Check if MCScanX was installed

pantools!244 · created Oct 15, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Oct 16, 2024
Fix add_functions in panproteome

pantools!242 · created Sep 10, 2024 by Workum, Dirk-Jan van develop
- Merged
- 1
- Approved
updated Oct 16, 2024
Fix kmc command for add_genomes

pantools!243 · created Sep 13, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Sep 24, 2024
Fix redirecting stdout for tblastx and tblastn

pantools!241 · created Sep 09, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Sep 24, 2024
Update missing parts in documentation

pantools!240 · created Aug 15, 2024 by Workum, Dirk-Jan van develop
- Merged
- 1
- Approved
updated Aug 15, 2024
Merge back large change to add_gfa_build_pangenome 3 of 6 checklist items completed

pantools!239 · created Aug 07, 2024 by Workum, Dirk-Jan van add_gfa_build_pangenome
- Merged
- 3
updated Aug 12, 2024
Replace most print statements with equivalent log calls

pantools!236 · created Jun 25, 2024 by Draisma, Arjan develop
- Merged
- 76
- Approved
updated Aug 06, 2024
Improving kmer index I/O speed by reading into memory

pantools!238 · created Jul 16, 2024 by Workum, Dirk-Jan van add_gfa_export
- Merged
- 1
- Approved
updated Jul 17, 2024
Update location SFTP server

pantools!234 · created Jun 18, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Jun 18, 2024
Bugfix tabs in fasta header

pantools!232 · created May 29, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated May 29, 2024
Update CONTRIBUTING.md to reflect current situation

pantools!231 · created May 23, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated May 23, 2024
Fix license PanTools

pantools!230 · created May 15, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated May 15, 2024
added exception with error message to transaction in alleleStatistics.

pantools!229 · created Apr 29, 2024 by Robin van Esch develop
- Merged
- Approved
updated Apr 29, 2024
Phased pangenomics bugfix

pantools!226 · created Apr 09, 2024 by Robin van Esch develop
- Merged
- 6
- Approved
updated Apr 29, 2024
Fixed multiple bugs in grouping

pantools!223 · created Jan 23, 2024 by Robin van Esch develop
- Merged
- 1
- Approved
updated Apr 29, 2024
Added error catching and debug logging for block setting properties of the pangenome node.

pantools!225 · created Apr 09, 2024 by Robin van Esch develop
- Merged
- 1
- Approved
updated Apr 19, 2024