Commit 5ab491fe authored by Jorge Navarro Muñoz's avatar Jorge Navarro Muñoz
Browse files

Parameters: updated help for new default values

parent adb08396
......@@ -1993,7 +1993,7 @@ def CMD_parser():
type=float, choices=[FloatRange(0.0, 1.0)],
help="Generate networks using multiple raw distance \
cutoff values, example: --cutoffs 0.1, 0.25, 0.5, 1.0. Default: \
all values from 0.10 to 0.80 with 0.05 intervals.")
parser.add_argument("--clans-off", dest="clans",action="store_false",
default=True, help="BiG-SCAPE will perform a second \
......@@ -2005,11 +2005,11 @@ def CMD_parser():
help="Cutoff Parameters for which clustering families \
into clans will be performed in raw distance. First \
value is the cutoff value family assignments for BGCs \
used in clan clustering (default: 0.5). Second value is \
used in clan clustering (default: 0.3). Second value is \
the cutoff value for clustering families into clans \
(default: 0.8). Average linkage for BGCs in a family is\
(default: 0.7). Average linkage for BGCs in a family is\
used for distances between families. Example: \
--clan_cutoff 0.5 0.8)")
--clan_cutoff 0.3 0.7)")
parser.add_argument("--hybrids-off", dest="hybrids", action="store_false",
default=True, help="Toggle to also add BGCs with hybrid\
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