Commit ba45c132 authored by Jorge Navarro Muñoz's avatar Jorge Navarro Muñoz
Browse files

Add mention of license, more info on developers, removed sklearn dependency...

Add mention of license, more info on developers, removed sklearn dependency (dependencies still need work)
parent cf37b41f
......@@ -4,14 +4,15 @@
"""
BiG-SCAPE
PI: Marnix Medema
PI: Marnix Medema marnix.medema@wur.nl
Developers:
Jorge Navarro jorge.navarromunoz@wur.nl
Emmanuel (Emzo) de los Santos E.De-Los-Santos@warwick.ac.uk
Marley Yeong marleyyeong@live.nl
Jorge Navarro
Emmanuel (Emzo) de los Santos
Dependencies: hmmer, biopython, mafft, munkres
Dependencies: hmmer, biopython, (mafft), munkres.py
Usage: Please see `python bigscape.py -h`
......@@ -19,6 +20,12 @@ Example: python bigscape.py -c 8 --pfam_dir ./ -i ./inputfiles -o ./results
Status: development/testing
See more info on
https://git.wageningenur.nl/medema-group/BiG-SCAPE
# License: GNU Affero General Public License v3 or later
# A copy of GNU AGPL v3 should have been included in this software package in LICENSE.txt.
"""
import cPickle as pickle # for storing and retrieving dictionaries
......@@ -41,7 +48,6 @@ from Bio.SubsMat.MatrixInfo import pam250 as scoring_matrix
from functions import *
from munkres import Munkres
from sklearn.cluster import AffinityPropagation
import numpy as np
from array import array
from scipy.sparse import lil_matrix
......
......@@ -6,12 +6,15 @@ BiG-SCAPE
PI: Marnix Medema
Developers:
Jorge Navarro jorge.navarromunoz@wur.nl
Emmanuel (Emzo) de los Santos E.De-Los-Santos@warwick.ac.uk
Marley Yeong marleyyeong@live.nl
Jorge Navarro
Emmanuel (Emzo) de los Santos
Functions used by bigscape.py
# License: GNU Affero General Public License v3 or later
# A copy of GNU AGPL v3 should have been included in this software package in LICENSE.txt.
"""
import os
......
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