Scheduled maintenance downtime on Tuesday December 1 from 7:00 PM until 9:00 PM

Commit 36fb0b23 authored by Jorge Navarro Muñoz's avatar Jorge Navarro Muñoz

Bugfix:

- '--mibig', '--mibig13'  and '--query_bgc' options are working again
parent 91e191c0
......@@ -2101,7 +2101,7 @@ def CMD_parser():
domain_whitelist.txt file", default=False,
action="store_true")
parser.add_argument("--version", action="version", version="%(prog)s 20190603")
parser.add_argument("--version", action="version", version="%(prog)s 20190604")
return parser.parse_args()
......@@ -2382,7 +2382,7 @@ if __name__=="__main__":
print("\nImporting MIBiG files")
get_gbk_files(bgcs_path, output_folder, bgc_fasta_folder, int(options.min_bgc_size),
include_gbk_str, exclude_gbk_str, bgc_info)
['*'], exclude_gbk_str, bgc_info)
for i in genbankDict.keys():
mibig_set.add(i)
......@@ -2400,8 +2400,7 @@ if __name__=="__main__":
else:
print("\nImporting query BGC file")
get_gbk_files(options.query_bgc, output_folder, bgc_fasta_folder,
int(options.min_bgc_size), include_gbk_str,
exclude_gbk_str, bgc_info)
int(options.min_bgc_size), ['*'], exclude_gbk_str, bgc_info)
if query_bgc not in genbankDict:
sys.exit("Error: not able to include Query BGC (check valid classes, BGC size, etc. Run again with --verbose)")
......
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