Commit a4b50473 authored by Jorge Navarro Muñoz's avatar Jorge Navarro Muñoz


Having a single GCF prevented GCC calling, but also exited the rest of
the function that writes the clustering and visualization results. Now
results are properly written in that specific case.
parent f4e6023e
......@@ -1723,8 +1723,7 @@ def clusterJsonBatch(bgcs, pathBase, className, matrix, pos_alignments, cutoffs=
# Detect if there's only 1 GCF. It makes pySAPC crash
if len(familyIdx) == 1:
clanLabels = [1]
#famSimMatrix = lil_matrix((len(familyIdx), len(familyIdx)), dtype=np.float32)
famSimMatrix = np.zeros((len(familyIdx), len(familyIdx)), dtype=np.float32)
familiesExt2Int = {gcfExtIdx:gcfIntIdx for gcfIntIdx,gcfExtIdx in enumerate(familyIdx)}
Markdown is supported
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment