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BiG-SCAPE
BiG-SCAPE
Commit de1405cd authored by Jorge Navarro Muñoz's avatar Jorge Navarro Muñoz
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Docker: updated docker files

parent e86a689d
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Showing with 3 additions and 2 deletions
Dockerfile
View file @ de1405cd
......@@ -21,6 +21,7 @@ RUN cd BiG-SCAPE \
&& hmmpress Pfam-A.hmm \
&& chmod +x /usr/src/BiG-SCAPE/*py \
&& chmod a+w /usr/src/BiG-SCAPE/domains_color_file.tsv \
&& chmod a+w /usr/src/BiG-SCAPE/Annotated_MIBiG_reference/ \
&& chmod 777 /home
USER 1000:1000
......
run_bigscape
View file @ de1405cd
......@@ -5,7 +5,7 @@ if [[ $# -eq 0 || $1 == "-h" || $1 == "--help" || $1 == "--version" ]]; then
--detach=false \
--rm \
--user=$(id -u):$(id -g) \
docker-registry.wur.nl/medema-group/big-scape:20191010 \
docker-registry.wur.nl/medema-group/big-scape:v1.0.1 \
$@
else
set -o errexit
......@@ -51,7 +51,7 @@ else
--detach=false \
--rm \
--user=$(id -u):$(id -g) \
docker-registry.wur.nl/medema-group/big-scape:20191010 \
docker-registry.wur.nl/medema-group/big-scape:v1.0.1 \
-i ${CONTAINER_SRC_DIR}/${INPUT_FILE} \
-o ${CONTAINER_DST_DIR}/${OUTPUT_FILE}\
$@
......
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