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medema-group
BiG-SCAPE
Commits
de1405cd
Commit
de1405cd
authored
Feb 07, 2020
by
Jorge Navarro Muñoz
Browse files
Docker: updated docker files
parent
e86a689d
Changes
2
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Dockerfile
View file @
de1405cd
...
...
@@ -21,6 +21,7 @@ RUN cd BiG-SCAPE \
&&
hmmpress Pfam-A.hmm
\
&&
chmod
+x /usr/src/BiG-SCAPE/
*
py
\
&&
chmod
a+w /usr/src/BiG-SCAPE/domains_color_file.tsv
\
&&
chmod
a+w /usr/src/BiG-SCAPE/Annotated_MIBiG_reference/
\
&&
chmod
777 /home
USER
1000:1000
...
...
run_bigscape
View file @
de1405cd
...
...
@@ -5,7 +5,7 @@ if [[ $# -eq 0 || $1 == "-h" || $1 == "--help" || $1 == "--version" ]]; then
--detach
=
false
\
--rm
\
--user
=
$(
id
-u
)
:
$(
id
-g
)
\
docker-registry.wur.nl/medema-group/big-scape:
20191010
\
docker-registry.wur.nl/medema-group/big-scape:
v1.0.1
\
$@
else
set
-o
errexit
...
...
@@ -51,7 +51,7 @@ else
--detach
=
false
\
--rm
\
--user
=
$(
id
-u
)
:
$(
id
-g
)
\
docker-registry.wur.nl/medema-group/big-scape:
20191010
\
docker-registry.wur.nl/medema-group/big-scape:
v1.0.1
\
-i
${
CONTAINER_SRC_DIR
}
/
${
INPUT_FILE
}
\
-o
${
CONTAINER_DST_DIR
}
/
${
OUTPUT_FILE
}
\
$@
...
...
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