1. 03 Jun, 2019 1 commit
    • Jorge Navarro Muñoz's avatar
      Compatibility with antiSMASH 5 files · 04e9b58c
      Jorge Navarro Muñoz authored
      - Added compatibility with antiSMASH 5 annotations
      - Added a filter to select only individual cluster (antiSMASH 4) or
      region (antiSMASH 5) files ('--include_gbk_str'). Previously, we had
      been using 'final' as a string to filter out complete genome files, but
      this string no longer appears in antiSMASH 5 files.
      - domain_whitelist.txt: commented example domain
      - domains_color_file.tsv: added random colors for more domains
  2. 30 Apr, 2018 1 commit
  3. 15 Feb, 2018 1 commit
    • Jorge Navarro Muñoz's avatar
      Minor corrections on SVG output · 3e5426ea
      Jorge Navarro Muñoz authored
      - Disable gene colors (Arrower script would generate random colors for
      genes that were named)
      - Disable gene categories (depending on domains found in gene, Arrower
      script drew a shadow surrounding each gene). These two made the SVG
      output too busy and not very informative
      - Fix typo in BiG-SCAPE
  4. 12 Sep, 2017 1 commit
    • Emzo de los Santos's avatar
      changed clans clustering based on the changes we discussed: · ace9893a
      Emzo de los Santos authored
      1. Distance is average of average of pairwise distances between family members
      2. Two arguments for clan cutoff: first is the cutoff value used for family assignment, second is the cutoff value for clans clustering
      3. Fixed bug in distance calculation (max of similarities instead of famSimilarities)
      4. Added clan_cutoff value to cutoffs if it's not there yet
      5. Clans TSV file
      6. Reworked clustering TSV file to take advantage of data structures
  5. 31 Jul, 2017 1 commit
  6. 31 May, 2017 3 commits
  7. 09 May, 2017 1 commit