- Gene and protein names will have colons in their names substituted by
underscores to avoid issues further on (colons are used internally to
split information contained in the sequences' header)
- Added a new bundle of MIBiG BGCs (version 1.4). Version 1.3 is still
kept for reproducibility

Family tab now explicitly mentions Clan-related information

See merge request !37

- Distance calculation modes are now 'global', 'auto' and 'glocal'

Genome accession parsing method now only considers "Organism" identifier within…

See merge request !36

Genome accession parsing method now only considers "Organism" identifier within a clustergbk file, if not found, it will use the gbk file name (excluding the 'clusterXXX' from antiSMASH run) as the Genome name

- Include only BGCs that contain a user-defined list of domain accessions. In
this case, the list is contained in the domain_whitelist.txt file (which
already includes an example). Toggle with --domain_whitelist

Added download button for downloading absence/presence table into a tab-separated tsv file

See merge request !35

improve heatmap color scaling for mibig metadata

See merge request !34

GCF with MIBiG are now shown in the overview screen's heatmap

See merge request !33

Fixed bug where incorrect BGCs where removed instead of the non-relevant MIBiG ones

overview screen now correctly counts input & mibig bgcs

See merge request !32

fix newick tree visualization error when GCF == 2 bgcs

See merge request !31

- Fixed incompatibility of recursive glob in Python 2
- Added parameter --label. Will be used in the network_file folder +
visualization dropdown run names
- Removed annoying warning message from last time we broke backwards
compatibility. You are always advised to re-run everything from scratch
while BiG-SCAPE is in pre-release development! But we'll announce loss
of backward compatibility here

mibig bgcs are highlighted in the network

See merge request !30

Implemented loading screen (with html5 defer attribute)

See merge request !29

Fix bug when there is only 1 BGC in a class

See merge request !28

- hybrids mode is now default. Use --hybrids-off to turn it off
- cutoffs now has a single default value: 0.3
- clans clustering is now activated by default. Use --clans-off to turn
it off
- clan_cutoff is now 0.3 0.7 (i.e. will use GCFs defined at 0.3 and will
form GCC using average distance between GCFs of 0.7 or less)