... | ... | @@ -38,7 +38,7 @@ Output directory, this will contain all output data files. See its structure and |
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--pfam_dir PFAM_DIR
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```
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Location of Pfam files. Default is same location of BiG-SCAPE. See how to prepare this files in the [installation instructions](installation)
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Location of Pfam files. Default is same location of BiG-SCAPE. See how to prepare these files in the [installation instructions](installation)
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## Cores
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... | ... | @@ -106,7 +106,7 @@ By default, BiG-SCAPE classifies the output files analysis based on the BGC prod |
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--banned_classes {PKSI, PKSother, NRPS, RiPPs, Saccharides, Terpene, PKS-NRP_Hybrids, Others}
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```
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BiG-SCAPE Classes that should NOT be included in the classification. E.g. "--banned_classes PKSI PKSOther". Strings in lowercase are also allowed.
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BiG-SCAPE Classes that should NOT be included in the classification. E.g. "`--banned_classes PKSI PKSOther`". Strings in lowercase are also allowed.
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## Cutoffs
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... | ... | |