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parameters · Changes

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Added more documentation authored Apr 01, 2018 by Jorge Navarro Muñoz's avatar Jorge Navarro Muñoz
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parameters.md
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......@@ -38,7 +38,7 @@ Output directory, this will contain all output data files. See its structure and
--pfam_dir PFAM_DIR
```
Location of Pfam files. Default is same location of BiG-SCAPE. See how to prepare this files in the [installation instructions](installation)
Location of Pfam files. Default is same location of BiG-SCAPE. See how to prepare these files in the [installation instructions](installation)
## Cores
......@@ -106,7 +106,7 @@ By default, BiG-SCAPE classifies the output files analysis based on the BGC prod
--banned_classes {PKSI, PKSother, NRPS, RiPPs, Saccharides, Terpene, PKS-NRP_Hybrids, Others}
```
BiG-SCAPE Classes that should NOT be included in the classification. E.g. "--banned_classes PKSI PKSOther". Strings in lowercase are also allowed.
BiG-SCAPE Classes that should NOT be included in the classification. E.g. "`--banned_classes PKSI PKSOther`". Strings in lowercase are also allowed.
## Cutoffs
......
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