| ... | ... | @@ -38,7 +38,7 @@ Output directory, this will contain all output data files. See its structure and |
|
|
|
--pfam_dir PFAM_DIR
|
|
|
|
```
|
|
|
|
|
|
|
|
Location of Pfam files. Default is same location of BiG-SCAPE. See how to prepare this files in the [installation instructions](installation)
|
|
|
|
Location of Pfam files. Default is same location of BiG-SCAPE. See how to prepare these files in the [installation instructions](installation)
|
|
|
|
|
|
|
|
## Cores
|
|
|
|
|
| ... | ... | @@ -106,7 +106,7 @@ By default, BiG-SCAPE classifies the output files analysis based on the BGC prod |
|
|
|
--banned_classes {PKSI, PKSother, NRPS, RiPPs, Saccharides, Terpene, PKS-NRP_Hybrids, Others}
|
|
|
|
```
|
|
|
|
|
|
|
|
BiG-SCAPE Classes that should NOT be included in the classification. E.g. "--banned_classes PKSI PKSOther". Strings in lowercase are also allowed.
|
|
|
|
BiG-SCAPE Classes that should NOT be included in the classification. E.g. "`--banned_classes PKSI PKSOther`". Strings in lowercase are also allowed.
|
|
|
|
|
|
|
|
## Cutoffs
|
|
|
|
|
| ... | ... | |
