Commit e86a689d authored by Jorge Navarro Muñoz's avatar Jorge Navarro Muñoz

Parameters: clarified '--clans-off' text

parent 72bd53c4
......@@ -2034,9 +2034,9 @@ def CMD_parser():
c=0.3.")
parser.add_argument("--clans-off", dest="clans", action="store_false",
default=True, help="BiG-SCAPE will perform a second \
layer of clustering and attempt to group families \
assigned from clustering with cutoff of 0.5 to clans")
default=True, help="Toggle to deactivate a second \
layer of clustering to attempt to group families \
into clans")
parser.add_argument("--clan_cutoff",dest="clan_cutoff",default=[0.3,0.7],
type=float, nargs=2, help="Cutoff Parameters for which \
......@@ -2076,6 +2076,7 @@ def CMD_parser():
default=False, help="Force domain prediction using \
hmmscan even if BiG-SCAPE finds processed domtable files\
(e.g. to use a new version of PFAM).")
parser.add_argument("--skip_ma", dest="skip_ma", action="store_true",
default=False, help="Skip multiple alignment of domains'\
sequences. Use if alignments have been generated in a \
......@@ -2100,7 +2101,7 @@ def CMD_parser():
domain_whitelist.txt file", default=False,
action="store_true")
parser.add_argument("--version", action="version", version="%(prog)s 1.0 (2020-01-27)")
parser.add_argument("--version", action="version", version="%(prog)s 1.0.1 (2020-01-27)")
return parser.parse_args()
......
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