• Overduin, Sam's avatar
    Impl. extra BarcodeIndex serialisation, use conjugate edges & edges to fasta output · c8303759
    Overduin, Sam authored and Overduin, Sam's avatar Overduin, Sam committed
    barcode_index.hpp:
    - Implemented taxa_codes + taxonomy_ serialisation
    - Made taxa_codes::map's public
    
    barcode_info_extractor.hpp:
    - Added funcs: EdgeIsValid, GetConjugateEdge, GetSequence, GetEdgeLength
    
    barcode_index_construction.cpp:
    - Added write_contigs_to_fasta for testing purposes.
    - Re-implemented taxonomy assignment to use edge & conjugate.
    
    read_cloud_connection_conditions.cpp:
    - In TaxaBreakPred.: if taxonomy of edge not found, try taxonomy of
      conjugate edge. Else taxa 0.
    
    logger.hpp:
    - Created special DEBUG_SAM for personal logging. Will change at end.
    c8303759