Commit 04a75dfc authored by Overduin, Sam's avatar Overduin, Sam
Browse files

Delete aa_todo_notes

parent a3d9211c
##append_taxa_tree_to_reads.py
from kraken to read header -> done!!
To test:
/mnt/LTR_userdata/overd008/tools/spades_install/bin/spades-core /home/overd008/mnt/lustre/output/spades/test/K55/configs/config.info /home/overd008/mnt/lustre/output/spades/test/K55/configs/mda_mode.info /home/overd008/mnt/lustre/output/spades/test/K55/configs/meta_mode.info
## Parse taxonomy from reads --> done!
Barcode mapping parser
common\barcode_index\barcode_index_builder.hpp @105 FillMapFrom10XReads
@118 add string tax_string = GetTaxaTreeFromRead(read)
# Encode as vector of pointers to ints?
@150 copy similar parser
## Settle taxonomy of edges --> done!
New function (implement where? Just before transition taxa filter? Seperately?)
---------here-----------
## Add transition taxonomy filter here:
M:\aa_Thesis_code\SPAdes-3.13.0-dev\src\common\modules\path_extend\read_cloud_path_extend\scaffold_graph_construction\
scaffold_graph_construction_pipeline.cpp@209
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