The first time the annotation script is run, it will download the NCBI taxonomy database to your $HOME. Keep in mind this will increase the running time the first time it is run.
Run the annotation script with:
Run the annotation script from the source directory with:
If you have built & installed taxaSPAdes or are using the prebuilt binaries, you can find the script at ```$install_dir/bin/append_taxatree_to_reads.py```
Optional options are:
```--main_ranks or -m```
Flag to keep only major ranks (domain, kingdom, phylum, class, order, family, genus, species) when annotating the taxonomy.