Commit a7612c11 authored by Iago Mosqueira's avatar Iago Mosqueira
Browse files

Adding output plots

parent cc24737e
......@@ -14,7 +14,7 @@
library(icesTAF)
library(FLCore)
source("functions.R")
source("utilities.R")
# --- STOCK
......@@ -23,9 +23,10 @@ stock.full <- readFLStock("bootstrap/initial/data/index.txt", na.strings="-1")
# ADD 2019 data: landings.n/wt, discards.n/wt
newfqs <- lapply(setNames(do.call(mapply, c(list(file.path),
as.list(expand.grid("bootstrap/initial/data/new", c("landings", "discards"),
c("canum.txt", "weca.txt"))))),
c("landings.n", "discards.n", "landings.wt", "discards.wt")), readVPAInterCatch)
as.list(expand.grid("bootstrap/initial/data/new", c("landings", "discards"),
c("canum.txt", "weca.txt"))))),
c("landings.n", "discards.n", "landings.wt", "discards.wt")),
readVPAInterCatch)
# REMOVE age 0
newfqs$discards.n <- newfqs$discards.n[-1,]
......@@ -41,8 +42,8 @@ landings(stock.full) <- computeLandings(stock.full)
catch(stock.full) <- computeCatch(stock.full, "all")
# SET units & range
units(stock.full) <- standardUnits(stock.full, biomass="tonnes",
numbers="thousands")
units(stock.full) <- standardUnits(stock.full,
biomass="tonnes", numbers="thousands")
range(stock.full, c("minfbar", "maxfbar", "plusgroup")) <- c(2, 6, 15)
# SET plusgroup
......
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unsorted: 12.21640354 16.79744817 16.90096379 17.04361566 16.54435969 16.55859340 17.47065860 16.07441657 18.18968177 18.76146864 18.99119131 19.17699562 15.60721091 19.81147053 20.36933942 14.89507415 14.48769044 14.30984692 13.97454496 21.02484259 13.39796415 22.59413286 22.84433187 23.16657244 12.58062149 12.27253639 11.97076931 24.02464682 24.50854804 25.34381638 25.47723879 10.74137286 27.08070715 29.89805381 30.34052103 29.39943089 31.96849240 32.10096945 32.55176039 34.06635790 34.92608325 35.32373306 35.87095835 36.62154594 37.15516769 8.937808180 7.817420743 7.767392586 7.550626497 6.803241040 1.859927920 1.875989550 1.836254156 1.819515219 1.795644187 1.752599229 1.929923269 1.701200021 1.661116304 1.620215201 1.490745568 1.340072032 1.155011687 1.022720813 3.009663887 3.273466966 5.986386782 0.7452702542 0.7538453312 4.771785170 0.02667666655 39.43875065 40.85625640 40.58478854 41.07087223 41.17898341 42.82526531 43.56142681 44.17628822 44.72062403 45.74586362 46.65300345 46.99310524 47.58909723 47.98506100 48.80787054 49.21243407 50.57511036 51.04254506 51.55825739 52.07117779 52.19848593 53.07031753 54.15331513 55.09201670 55.72746902 56.64666840 56.80293501 58.92022463 60.81460847 61.97375830 62.86383173 64.07450529 65.01683939 71.87607093 67.14070790 67.52021660 70.93325895 72.61217192 74.86732833 83.62648927 80.86954474 79.86870842 85.99647505 87.65153227 89.82161283 96.30674824 96.91675103 99.82172493 104.2572568 107.2790424 108.6140106 110.0203341 114.5032544 115.1389078 118.4842035 120.6328233 121.3306678 123.2655638 124.9387526 126.7499958 129.0985634 131.0148926 132.5468857 134.1216254 135.2355399 137.6362121 137.9467315 140.8404759 143.0250121 144.5844750 146.2165901 147.4553691 151.5160151 154.0597957 156.4038056 161.1554459 161.5849367 165.4126234 169.9117093 170.8100822 173.7982613 174.3950755 180.3238636 182.5238021 185.0824957 193.4624766 192.6181346 192.2028270 193.9723218 195.2128880 195.7256479 189.8653952 197.0089358 198.2730405 200.5353365 199.5173308 200.8334649 202.9711016 205.1208015 205.8042976 207.3019702 206.8183237 207.6216919 208.1687954 210.0047677 211.5439393 212.8219741 215.5957827 217.7524754 219.7382952 222.2044554 222.7670351 226.3563641 227.7375428 229.9793627 229.6850785 230.1494981 231.9130363 232.0147622 233.0038939 234.3656418 236.5943272 237.6387691 239.3855306 240.4556807 242.9739436 243.5019304 245.1355550 250.3847877 252.4040872 258.1055187 273.6643843 288.4991871 329.1650535 351.2740336 417.4639387 443.4488084 461.8609885 538.4934446 544.1306478 604.2759632 620.8634680 685.8413716 772.5066414 830.3203486 860.0803444 927.6890505 944.5104621 1009.706257 1070.469900 1094.120218 2293.386804 1225.423344 1238.653212 2776.641644 1341.330789 1414.271928 9306.519931 16346.78771 18282.71492 33527.77933 79384.35792 137665.4941 1516142.303 3084478.265 3144038.673 2673.880635 2825.686192 40346.74489 213551.6490 1054811.531 832469.7513 3044198.418
sorted: 0.02667666655 0.7452702542 0.7538453312 1.022720813 1.155011687 1.340072032 1.490745568 1.620215201 1.661116304 1.701200021 1.752599229 1.795644187 1.819515219 1.836254156 1.859927920 1.875989550 1.929923269 3.009663887 3.273466966 4.771785170 5.986386782 6.803241040 7.550626497 7.767392586 7.817420743 8.937808180 10.74137286 11.97076931 12.21640354 12.27253639 12.58062149 13.39796415 13.97454496 14.30984692 14.48769044 14.89507415 15.60721091 16.07441657 16.54435969 16.55859340 16.79744817 16.90096379 17.04361566 17.47065860 18.18968177 18.76146864 18.99119131 19.17699562 19.81147053 20.36933942 21.02484259 22.59413286 22.84433187 23.16657244 24.02464682 24.50854804 25.34381638 25.47723879 27.08070715 29.39943089 29.89805381 30.34052103 31.96849240 32.10096945 32.55176039 34.06635790 34.92608325 35.32373306 35.87095835 36.62154594 37.15516769 39.43875065 40.58478854 40.85625640 41.07087223 41.17898341 42.82526531 43.56142681 44.17628822 44.72062403 45.74586362 46.65300345 46.99310524 47.58909723 47.98506100 48.80787054 49.21243407 50.57511036 51.04254506 51.55825739 52.07117779 52.19848593 53.07031753 54.15331513 55.09201670 55.72746902 56.64666840 56.80293501 58.92022463 60.81460847 61.97375830 62.86383173 64.07450529 65.01683939 67.14070790 67.52021660 70.93325895 71.87607093 72.61217192 74.86732833 79.86870842 80.86954474 83.62648927 85.99647505 87.65153227 89.82161283 96.30674824 96.91675103 99.82172493 104.2572568 107.2790424 108.6140106 110.0203341 114.5032544 115.1389078 118.4842035 120.6328233 121.3306678 123.2655638 124.9387526 126.7499958 129.0985634 131.0148926 132.5468857 134.1216254 135.2355399 137.6362121 137.9467315 140.8404759 143.0250121 144.5844750 146.2165901 147.4553691 151.5160151 154.0597957 156.4038056 161.1554459 161.5849367 165.4126234 169.9117093 170.8100822 173.7982613 174.3950755 180.3238636 182.5238021 185.0824957 189.8653952 192.2028270 192.6181346 193.4624766 193.9723218 195.2128880 195.7256479 197.0089358 198.2730405 199.5173308 200.5353365 200.8334649 202.9711016 205.1208015 205.8042976 206.8183237 207.3019702 207.6216919 208.1687954 210.0047677 211.5439393 212.8219741 215.5957827 217.7524754 219.7382952 222.2044554 222.7670351 226.3563641 227.7375428 229.6850785 229.9793627 230.1494981 231.9130363 232.0147622 233.0038939 234.3656418 236.5943272 237.6387691 239.3855306 240.4556807 242.9739436 243.5019304 245.1355550 250.3847877 252.4040872 258.1055187 273.6643843 288.4991871 329.1650535 351.2740336 417.4639387 443.4488084 461.8609885 538.4934446 544.1306478 604.2759632 620.8634680 685.8413716 772.5066414 830.3203486 860.0803444 927.6890505 944.5104621 1009.706257 1070.469900 1094.120218 1225.423344 1238.653212 1341.330789 1414.271928 2293.386804 2673.880635 2776.641644 2825.686192 9306.519931 16346.78771 18282.71492 33527.77933 40346.74489 79384.35792 137665.4941 213551.6490 832469.7513 1054811.531 1516142.303 3044198.418 3084478.265 3144038.673
unsorted: 11.52436728 18.27825114 18.37886143 18.11381834 18.61422849 17.80373609 17.58612496 19.14019383 19.33028511 19.94756741 17.24599657 20.09945176 20.76094861 21.19880791 21.69044142 22.00264269 22.56387803 15.93778045 15.67756364 15.34649669 15.10987465 23.29167024 14.09738404 24.21487128 24.74849989 24.98133783 13.33181165 12.84368814 12.16005732 11.72233998 26.73473426 28.09598181 10.60449777 29.19416978 31.44859013 31.14625397 32.69829530 33.77268280 34.91347480 35.31426622 35.71047893 36.06794606 36.17308823 36.93198779 38.27009836 8.612361666 39.65658285 40.10947747 41.64521301 42.25857501 42.86772389 43.89082803 44.41282747 7.978971033 7.769687518 7.319994848 1.876624793 1.892398692 1.847194701 1.829829535 1.805899639 1.770788634 1.934606383 1.716861120 1.669430559 1.632051438 1.502370125 1.349295967 1.160236097 1.030067090 3.027980167 6.341138012 4.370278365 3.993375985 4.649501838 0.7558298880 0.02715006336 45.50886223 46.51277014 47.69777620 48.16382671 48.89214193 49.64816278 50.62420479 52.97634969 52.35790706 53.74960263 54.16157556 54.56587828 55.55529158 56.19521929 56.52690062 57.47857591 58.44919240 58.88339984 59.79483385 61.02482804 61.33946287 61.79664165 63.77292219 71.66696568 65.99196835 66.75265483 69.73168786 70.62706512 72.33673412 72.12178679 76.61000102 77.14238322 83.11717714 79.27652663 84.49720520 87.88551965 93.34168207 95.51264537 98.06702737 101.4437378 107.4579152 108.6808212 115.4447476 115.8296870 120.1438046 122.2772734 126.4724105 129.1193691 130.2751807 131.9976644 135.9585481 137.8001109 139.8388221 141.9724217 142.5975933 145.3609097 147.7140911 148.9243147 151.0732364 153.7822512 153.3733610 155.8342913 158.3191692 160.0265532 164.0675926 165.7404286 166.3529728 169.1996251 174.6101702 178.3810215 179.8610904 182.5575925 184.2258609 192.1990678 192.7579577 194.4686248 199.3764660 200.1834513 208.5900867 208.2191458 205.9363269 220.3650484 219.3548375 219.7770783 218.6627542 220.9211942 217.1103664 222.2131466 223.6703173 223.8636177 227.8823828 228.7200817 229.4253959 232.3209698 233.8685469 233.4856183 234.8567848 235.1136775 235.5501805 238.4163685 239.4907544 241.4481423 243.1621126 246.6755358 247.5227608 250.1989986 254.5752577 255.4993896 257.2080910 257.6945004 258.7785310 259.2317718 259.9474768 261.3386989 262.0500693 264.3628151 265.7596224 269.3715158 270.0166190 271.9582802 272.5474341 275.4796166 280.1213849 287.3131810 303.0527843 319.4082460 366.7340494 388.2176300 466.2956510 498.2317153 511.9951993 536.4971996 596.8987903 612.7701143 682.4418800 767.5772858 823.5593470 898.8852571 961.4963529 1036.716794 1048.011857 2276.753675 1112.647739 1192.800090 1201.361465 2775.807834 1342.188193 1353.286379 1399.924403 1502.515184 9729.650572 16333.71481 18231.00210 35527.70183 82231.40691 138319.6474 1518097.665 3094482.014 3080377.859 2587.894204 3111.639153 42129.26345 213459.2575 806539.6573 1054092.005 2986266.263
sorted: 0.02715006336 0.7558298880 1.030067090 1.160236097 1.349295967 1.502370125 1.632051438 1.669430559 1.716861120 1.770788634 1.805899639 1.829829535 1.847194701 1.876624793 1.892398692 1.934606383 3.027980167 3.993375985 4.370278365 4.649501838 6.341138012 7.319994848 7.769687518 7.978971033 8.612361666 10.60449777 11.52436728 11.72233998 12.16005732 12.84368814 13.33181165 14.09738404 15.10987465 15.34649669 15.67756364 15.93778045 17.24599657 17.58612496 17.80373609 18.11381834 18.27825114 18.37886143 18.61422849 19.14019383 19.33028511 19.94756741 20.09945176 20.76094861 21.19880791 21.69044142 22.00264269 22.56387803 23.29167024 24.21487128 24.74849989 24.98133783 26.73473426 28.09598181 29.19416978 31.14625397 31.44859013 32.69829530 33.77268280 34.91347480 35.31426622 35.71047893 36.06794606 36.17308823 36.93198779 38.27009836 39.65658285 40.10947747 41.64521301 42.25857501 42.86772389 43.89082803 44.41282747 45.50886223 46.51277014 47.69777620 48.16382671 48.89214193 49.64816278 50.62420479 52.35790706 52.97634969 53.74960263 54.16157556 54.56587828 55.55529158 56.19521929 56.52690062 57.47857591 58.44919240 58.88339984 59.79483385 61.02482804 61.33946287 61.79664165 63.77292219 65.99196835 66.75265483 69.73168786 70.62706512 71.66696568 72.12178679 72.33673412 76.61000102 77.14238322 79.27652663 83.11717714 84.49720520 87.88551965 93.34168207 95.51264537 98.06702737 101.4437378 107.4579152 108.6808212 115.4447476 115.8296870 120.1438046 122.2772734 126.4724105 129.1193691 130.2751807 131.9976644 135.9585481 137.8001109 139.8388221 141.9724217 142.5975933 145.3609097 147.7140911 148.9243147 151.0732364 153.3733610 153.7822512 155.8342913 158.3191692 160.0265532 164.0675926 165.7404286 166.3529728 169.1996251 174.6101702 178.3810215 179.8610904 182.5575925 184.2258609 192.1990678 192.7579577 194.4686248 199.3764660 200.1834513 205.9363269 208.2191458 208.5900867 217.1103664 218.6627542 219.3548375 219.7770783 220.3650484 220.9211942 222.2131466 223.6703173 223.8636177 227.8823828 228.7200817 229.4253959 232.3209698 233.4856183 233.8685469 234.8567848 235.1136775 235.5501805 238.4163685 239.4907544 241.4481423 243.1621126 246.6755358 247.5227608 250.1989986 254.5752577 255.4993896 257.2080910 257.6945004 258.7785310 259.2317718 259.9474768 261.3386989 262.0500693 264.3628151 265.7596224 269.3715158 270.0166190 271.9582802 272.5474341 275.4796166 280.1213849 287.3131810 303.0527843 319.4082460 366.7340494 388.2176300 466.2956510 498.2317153 511.9951993 536.4971996 596.8987903 612.7701143 682.4418800 767.5772858 823.5593470 898.8852571 961.4963529 1036.716794 1048.011857 1112.647739 1192.800090 1201.361465 1342.188193 1353.286379 1399.924403 1502.515184 2276.753675 2587.894204 2775.807834 3111.639153 9729.650572 16333.71481 18231.00210 35527.70183 42129.26345 82231.40691 138319.6474 213459.2575 806539.6573 1054092.005 1518097.665 2986266.263 3080377.859 3094482.014
# Number of parameters = 239 Objective function value = 94.5663334833158 Maximum gradient component = 8.98064280008271e-05
# Number of parameters = 238 Objective function value = 147.187201742664 Maximum gradient component = 0.000106015675312321
# logsigmaL:
1.23668255275114 -0.951663692898535 0.0724194957766610
1.27907767792169 -0.998833823914867 0.0768906733030854
# logsigmaD:
-1.59288252497947 0.612507988113099 -0.0453320631288387
-1.70050877200510 0.668524905802429 -0.0509696553746853
# logsigmaU:
-0.670556717176651 -0.0930021926581932 0.0262789888000519
-0.658910114540754 -0.109571579159278 0.0512627382440026
-0.653363293316525 -0.115478137250201 0.0287348995933569
-0.609543842279545 -0.139244257855807 0.0548625643132630
# logsigmaLWTS:
-2.24214746534391 0.124356576734585 -0.000129043002430280
-4.96874250879493 0.807181085087165 -0.0422721628938358
# logsigmaSWTS:
-4.12613489823349 0.281602629643652 -0.00624310566438661
-1.03108810379501 -0.574204872877540 0.0553252846801813
# loga0:
0.100000017543
0.100000509348
# logSWfact:
0.999528416785
0.569340903824
# log_sel_coff1:
-1.42473294263 -8.06288323131 -5.71537031759 -7.74199312370 -1.62159206774 -2.31188884043 -2.02580205108 -2.62386192939 -2.64197372665 -1.83342297975 -3.67385271328 -3.73913717733 -2.51437504150 -1.26278174427 -1.91839817213 -1.33621190297 -1.69142178937 -1.44663934576 -1.37703423080 -1.33410251365 -0.284005228058 -2.30539959363 -0.733084105752 0.284661110080 0.144868645376 1.00620469845 1.65111627348 1.86833976340 1.44712337255 1.53899550564 1.44353605334 1.94163138743 1.47746148268 1.24270627848 1.16480561224 1.28930920532 1.63627400682 1.43062405145 1.65053112703 1.08263103502 1.38476577187 0.725647070364 0.634541939541 0.408760838371 0.589943171855 1.11379990575 1.25728100080 0.984775266193 1.80991490912 1.73527812974 1.79065120520 1.65281054894 1.82205343090 1.90949100656 1.77615313785 1.80551268423 1.61492064892 2.04297500676 1.90730376483 1.92461087349 1.70552779419 1.60000257029 1.62978527474 1.55377297267 1.06112863060 1.02577567937 0.437686646045 1.29840174689 1.30829122036 1.28484739552 1.49577722956 1.40718362397 1.60017816557 1.38868434841 1.60300842277 1.62911134701 1.71635483957 1.49183678918 1.77075976136 1.84355347743 1.92723751275 1.86137040977 1.75124064346 1.58977980590 1.49640565203 1.53128927424 0.908830894496 -0.0732395567467 0.619035573288 0.914570137008 1.49889842441 0.672101710056 0.934060559883 0.990758131651 1.37400858376 1.08363911661 1.45136314342 1.60176113072 1.62771619108 1.26640851505 1.81453743447 1.81242298511 1.78280768726 1.60523027240 1.52155911792 1.50011841309 1.58706072433 1.55704599679 1.65811235102 -0.620905550838 0.135297940477 0.835186403180 0.994132898969 0.405783705981 0.668110088147 0.767326229976 1.06575409274 1.14231743097 1.01623263177 1.12704806272 1.21679582576 1.02807343368 1.26907251778 1.50273213211 1.65341332398 1.26454812003 1.18922350254 1.13939902772 1.38772569711 1.27592853359 1.34478516136 0.255543408123
-1.43551745915 -8.03074035120 -5.60997271315 -7.74106901607 -1.89514228941 -2.03312547043 -2.22920361448 -2.29411615221 -2.89611438194 -1.61027358453 -3.37850062309 -3.77970889046 -2.91762421853 -1.05964028404 -2.25168544839 -1.03649002515 -1.72374997626 -1.55392707128 -1.28692885446 -1.66567446924 -0.299392617668 -1.50523852205 -0.724219256660 0.249102105318 0.152639809098 0.911420611030 1.64911464340 1.84059004233 1.49221275878 1.52501107089 1.41203851083 1.92252111305 1.51796909069 1.31779207505 1.07906158267 1.34057046005 1.52669482411 1.48848322264 1.59998549176 1.26187266701 1.21279103266 0.899974866198 0.574973151125 0.382313959356 0.621697463019 1.08841973204 1.29422948519 0.936748102952 1.80604554579 1.72019678371 1.81849715398 1.62371017685 1.83971650028 1.86308864459 1.83430856099 1.78633399944 1.62563624609 1.97766142809 1.90475437672 2.00876139616 1.68881587552 1.70088166228 1.47975632169 1.65699522763 0.862182866397 1.23047399393 0.449541534285 1.27900733019 1.32324367761 1.25994392921 1.50196477290 1.39817495650 1.60462052245 1.38893393895 1.58711155772 1.59380381489 1.75262267715 1.46507724038 1.76322720392 1.77512314273 1.98890086333 1.79968480379 1.84479473591 1.56094782995 1.56310285012 1.27593507776 1.18131345096 -0.766215148302 0.620326909454 0.902074355177 1.48814979416 0.712313472328 0.886444948723 0.984349464317 1.38282257636 1.06782812566 1.41977289490 1.56384478553 1.66744370774 1.25554840044 1.71200090048 1.84055418306 1.78045383568 1.64286607911 1.52682617328 1.48694733533 1.53558245149 1.44100720657 1.25319305644 0.315948645645 0.158454430665 0.823261145949 1.01164377044 0.403549049462 0.673816537765 0.713954471168 1.10045286423 1.12484409712 1.04813674800 1.07544480808 1.24453278535 0.983858232659 1.24193058069 1.42303745942 1.66210561708 1.37148396134 1.11447838653 1.17934143664 1.22425265012 1.28995016193 0.845090256054 -0.233842669953
# log_sel_cofU:
-9.01041252709 -8.68179705110 -9.63099786653 -9.70538976303 -10.0514940811 -10.5257788638
-4.04780329464 -4.71394551704 -5.89963736386 -5.93779854485 -9.47579647392 2.41857645925
-9.02188437183 -8.70997073797 -9.62489787385 -9.76573723817 -10.1177966292 -10.6141684463
-4.05741725893 -4.72733135078 -5.89730796855 -5.97608783254 -9.52528277258 2.38197838222
# disc_curve:
0.871863680882 -1.81435900510
0.875878365202 -1.82330353683
# logK:
1.08127691872
-0.395258778425
# log_temp_wts_Linf:
0.00000000000 0.00000000000 0.00000000000 0.00000000000 0.00000000000
# log_initpop:
11.2509613783 11.4193626417 11.0642625698 9.78538553125 9.77582331104 10.3482398526 9.44656965781 8.06627236119 10.6605863754 11.8103166287 11.6738559861 12.9841613433 10.6410056220 11.1596561776 9.32682094037 9.46049866152 13.3147200263 11.8802791109 10.8918257614 11.3786414534 11.7785039938 11.4619628500 12.2445851216 10.9062164865 11.5834355237 11.9246118700 11.7676960618 11.0041350720 11.8135435153 12.0061022851 11.0337624772 9.80312775070 12.1600354664 12.3333330484 12.2520977479 12.2172746862 11.4491874439 11.6139688702 12.0143502491 11.3451357300 13.4404652447 11.8124985727 12.4376679966 11.3809522962 12.9893602746 11.3532620597 11.0570689364 11.6586660229 11.2311125459 12.6718754983 11.8775853737 11.6347120874 11.8565137049 11.2181089177 12.2972024405 11.4427065497 10.7457438149 10.7886662462 12.1067204108 11.1281349997 11.2468667201 11.4838237067 12.1563533831 12.0965724734 11.2040829789 11.4056295651 12.1209308092 12.0641308691 11.3466123092 11.5061567410 11.5683846000 12.4405943064
11.2442225245 11.4130514020 11.0679016598 9.79153809982 9.77951193162 10.3502589274 9.43232159531 8.05211368231 10.6605137828 11.8047331632 11.6806771351 12.9889721812 10.6461663034 11.1465287394 9.31714187371 9.45265622039 13.3123902462 11.8933062774 10.8997343859 11.3814232478 11.7663102471 11.4348796660 12.2212277094 10.9069558382 11.5980711094 11.9283886899 11.7641698103 11.0044997354 11.8185707713 12.0100796321 11.0312932668 9.81030267358 12.1679364251 12.3454911683 12.2420985042 12.1898701261 11.4296157443 11.6283373278 12.0395407853 11.3590536563 13.4225245563 11.7907813113 12.4201048512 11.3955958551 13.0046149976 11.3811844275 11.0969462691 11.6665354527 11.2042435362 12.6431015260 11.8890573541 11.6757018565 11.8984609518 11.2226021280 12.2646607444 11.4398096989 10.7872298474 10.8418088460 12.1308641487 11.1108566033 11.2245169039 11.5006258253 12.2320886155 12.2067852144 11.1117830431 11.5937009635 12.2825122458 11.8626387355 11.2610424459 11.7257064044 11.3989277476
# Number of parameters = 244 Objective function value = -1151.76495445485 Maximum gradient component = 0.000208186459104809
# Number of parameters = 243 Objective function value = -1187.44481965312 Maximum gradient component = 0.000194200768520503
# logsigmaL:
1.23668255306584 -0.951663690914072 0.0724194956462000
1.27907767856475 -0.998833824364780 0.0768906733495376
# logsigmaD:
-1.59288255259989 0.612508001643673 -0.0453320643065105
-1.70050877776368 0.668524917730541 -0.0509696569494953
# logsigmaU:
-0.670556719666252 -0.0930021937113372 0.0262789890009638
-0.658910120268872 -0.109571575598035 0.0512627379993601
-0.653363286048342 -0.115478140694439 0.0287348999129051
-0.609543844271675 -0.139244255117686 0.0548625638240033
# logsigmaLWTS:
-2.53887270623242 -0.402630210863669 0.0405899333508453
-2.53556591158764 -0.404073451012351 0.0406295872881162
# logsigmaSWTS:
-2.99964613233312 -0.288814916538493 0.0367261803630662
-3.00869114541994 -0.284679633112340 0.0363535418855840
# loga0:
0.899999798026
0.899999785898
# logSWfact:
-0.0607233037099
-0.0607589908219
# log_sel_coff1:
-1.42473293990 -8.06288317783 -5.71537033832 -7.74199310928 -1.62159203886 -2.31188884604 -2.02580189030 -2.62386175729 -2.64197375214 -1.83342310667 -3.67385259511 -3.73913705609 -2.51437506780 -1.26278165995 -1.91839820045 -1.33621193524 -1.69142180639 -1.44663937588 -1.37703425312 -1.33410251609 -0.284005255123 -2.30539957222 -0.733084111022 0.284661137234 0.144868648414 1.00620470140 1.65111626969 1.86833976643 1.44712336888 1.53899550446 1.44353604320 1.94163138637 1.47746147276 1.24270628935 1.16480561939 1.28930920684 1.63627400039 1.43062404530 1.65053112701 1.08263103222 1.38476577570 0.725647064187 0.634541925896 0.408760823449 0.589943177941 1.11379990383 1.25728099507 0.984775265024 1.80991490464 1.73527813199 1.79065120019 1.65281054916 1.82205342353 1.90949101166 1.77615313856 1.80551268211 1.61492065075 2.04297500138 1.90730376642 1.92461087237 1.70552779162 1.60000256438 1.62978527074 1.55377296609 1.06112860814 1.02577566098 0.437686635490 1.29840174622 1.30829122032 1.28484739574 1.49577722553 1.40718362192 1.60017816249 1.38868434552 1.60300842250 1.62911134357 1.71635483636 1.49183678844 1.77075975323 1.84355347839 1.92723750891 1.86137040629 1.75124063907 1.58977980646 1.49640565171 1.53128926427 0.908830873442 -0.0732395800619 0.619035571984 0.914570126459 1.49889842696 0.672101704116 0.934060553651 0.990758121296 1.37400858432 1.08363911109 1.45136313893 1.60176112758 1.62771618479 1.26640851084 1.81453742853 1.81242298375 1.78280768113 1.60523027282 1.52155911384 1.50011840830 1.58706071851 1.55704598800 1.65811232884 -0.620905587955 0.135297952041 0.835186399488 0.994132898812 0.405783709769 0.668110089756 0.767326222490 1.06575408311 1.14231743111 1.01623262187 1.12704805939 1.21679581424 1.02807343049 1.26907251262 1.50273212617 1.65341332256 1.26454811143 1.18922349653 1.13939901784 1.38772569266 1.27592852292 1.34478513853 0.255543362295
-1.43551745882 -8.03074037755 -5.60997270149 -7.74106902494 -1.89514228367 -2.03312556629 -2.22920351903 -2.29411616051 -2.89611438109 -1.61027363133 -3.37850065784 -3.77970886652 -2.91762412785 -1.05964025029 -2.25168547466 -1.03649003725 -1.72374997371 -1.55392706785 -1.28692886188 -1.66567447661 -0.299392620433 -1.50523852858 -0.724219255585 0.249102107635 0.152639809808 0.911420617278 1.64911464665 1.84059004434 1.49221275939 1.52501107333 1.41203850979 1.92252111314 1.51796908452 1.31779207635 1.07906158362 1.34057046477 1.52669482470 1.48848322803 1.59998549754 1.26187266924 1.21279101934 0.899974866584 0.574973150630 0.382313957355 0.621697460272 1.08841972329 1.29422948646 0.936748107700 1.80604554327 1.72019678419 1.81849715801 1.62371017470 1.83971650088 1.86308864720 1.83430856408 1.78633400012 1.62563624551 1.97766142691 1.90475437413 2.00876139474 1.68881587818 1.70088165742 1.47975632871 1.65699522465 0.862182869369 1.23047398861 0.449541541802 1.27900732805 1.32324367520 1.25994393053 1.50196477190 1.39817495994 1.60462052161 1.38893393543 1.58711155857 1.59380381414 1.75262267726 1.46507724124 1.76322720262 1.77512314416 1.98890086190 1.79968480759 1.84479473442 1.56094782960 1.56310284655 1.27593507836 1.18131344745 -0.766215149328 0.620326915576 0.902074355601 1.48814978850 0.712313480541 0.886444946883 0.984349467016 1.38282257683 1.06782812869 1.41977289522 1.56384478282 1.66744370420 1.25554840556 1.71200089936 1.84055418528 1.78045383325 1.64286607927 1.52682617590 1.48694733237 1.53558245572 1.44100720157 1.25319305541 0.315948639118 0.158454436880 0.823261155257 1.01164376537 0.403549042584 0.673816547211 0.713954471844 1.10045286871 1.12484409562 1.04813675431 1.07544480565 1.24453278676 0.983858231521 1.24193058250 1.42303745759 1.66210561957 1.37148395507 1.11447838834 1.17934143560 1.22425264366 1.28995015919 0.845090251150 -0.233842671627
# log_sel_cofU:
-9.01041253398 -8.68179705089 -9.63099788499 -9.70538974681 -10.0514940972 -10.5257788721
-4.04780330164 -4.71394551714 -5.89963738804 -5.93779850246 -9.47579659898 2.41857693506
-9.02188437402 -8.70997074235 -9.62489787398 -9.76573723735 -10.1177966360 -10.6141684450
-4.05741726067 -4.72733135173 -5.89730797410 -5.97608782270 -9.52528283168 2.38197866403
# disc_curve:
0.871863683278 -1.81435903035
0.875878364025 -1.82330354274
# logK:
1.48469248423
1.48834073151
# log_temp_wts_Linf:
0.240815446136 0.408356775514 0.403720891364 0.266849346577 0.278587515242
0.242713264996 0.405372041891 0.409275599507 0.269694781615 0.281118738866
# log_initpop:
11.2509613824 11.4193626438 11.0642625709 9.78538553459 9.77582330910 10.3482398489 9.44656965056 8.06627234143 10.6605863728 11.8103166336 11.6738559943 12.9841613432 10.6410056235 11.1596561835 9.32682094035 9.46049866842 13.3147200299 11.8802791125 10.8918257660 11.3786414568 11.7785040040 11.4619628615 12.2445851302 10.9062164882 11.5834355238 11.9246118712 11.7676960686 11.0041350765 11.8135435249 12.0061022871 11.0337624807 9.80312774887 12.1600354722 12.3333330624 12.2520977607 12.2172746850 11.4491874453 11.6139688746 12.0143502494 11.3451357327 13.4404652517 11.8124985857 12.4376680115 11.3809523067 12.9893602805 11.3532620637 11.0570689439 11.6586660360 11.2311125595 12.6718755049 11.8775853758 11.6347120891 11.8565137057 11.2181089189 12.2972024434 11.4427065534 10.7457438137 10.7886662504 12.1067204144 11.1281350029 11.2468667219 11.4838237117 12.1563533923 12.0965724822 11.2040829862 11.4056295794 12.1209308188 12.0641308731 11.3466123122 11.5061567593 11.5683846145 12.4405942737
11.2442225250 11.4130514006 11.0679016593 9.79153809655 9.77951192569 10.3502589216 9.43232159456 8.05211366536 10.6605137773 11.8047331615 11.6806771326 12.9889721796 10.6461663020 11.1465287391 9.31714187380 9.45265622338 13.3123902515 11.8933062805 10.8997343852 11.3814232484 11.7663102516 11.4348796712 12.2212277109 10.9069558366 11.5980711078 11.9283886877 11.7641698124 11.0044997403 11.8185707745 12.0100796349 11.0312932661 9.81030267614 12.1679364290 12.3454911745 12.2420985071 12.1898701249 11.4296157419 11.6283373282 12.0395407854 11.3590536555 13.4225245569 11.7907813105 12.4201048525 11.3955958587 13.0046149997 11.3811844319 11.0969462730 11.6665354565 11.2042435351 12.6431015287 11.8890573542 11.6757018622 11.8984609583 11.2226021346 12.2646607482 11.4398097000 10.7872298485 10.8418088499 12.1308641507 11.1108566032 11.2245169009 11.5006258217 12.2320886159 12.2067852141 11.1117830461 11.5937009677 12.2825122486 11.8626387399 11.2610424473 11.7257064066 11.3989277430
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......@@ -69,7 +69,6 @@ obs_landings_at_age
119.5 6151.5 24249.5 11489.5 4475.5 8994.5 4495.5 774.5 278.5 854.5
297.5 4839.5 17561.5 16756.5 5900.5 2117.5 3738.5 2002.5 443.5 866.5
416.5 4928.5 17641.5 16818.5 5909.5 2118.5 3745.5 2005.5 443.5 498.5
331.468 11141.9 9184.6 11994.6 10095.1 3918.63 1096.48 1942.65 804.39 436.726
stock_weights
......@@ -135,18 +134,17 @@ stock_weights
0.01 0.067 0.151 0.186 0.232 0.248 0.236 0.261 0.221 0.280813
0.021 0.074 0.131 0.174 0.231 0.242 0.249 0.217 0.233 0.223
0.025 0.085 0.146 0.18 0.205 0.237 0.227 0.219 0.259 0.406474
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
obs_landings
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
bs3
1 0.9063 0.8187 0.7369 0.6607 0.59 0.5245 0.464 0.4084 0.3574 0.3109 0.2685 0.2302 0.1958 0.1649 0.1375 0.1133 0.09211 0.07375 0.058 0.04468 0.03357 0.02447 0.01719 0.01151 0.007251 0.004196 0.002148 0.0009063 0.0002685 3.357e-05 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0.09215 0.1753 0.2498 0.3159 0.3741 0.4248 0.4681 0.5046 0.5345 0.5582 0.5761 0.5885 0.5958 0.5982 0.5963 0.5902 0.5805 0.5674 0.5512 0.5324 0.5112 0.4881 0.4634 0.4374 0.4106 0.3831 0.3555 0.328 0.301 0.2749 0.25 0.2266 0.2047 0.1842 0.1652 0.1475 0.1311 0.116 0.1021 0.08936 0.07772 0.06713 0.05756 0.04894 0.04123 0.03437 0.02832 0.02303 0.01844 0.0145 0.01117 0.008392 0.006118 0.004297 0.002878 0.001813 0.001049 0.0005371 0.0002266 6.713e-05 8.392e-06 0
0 0.001527 0.005975 0.01314 0.02283 0.03483 0.04894 0.06497 0.08271 0.102 0.1225 0.1442 0.1668 0.19 0.2138 0.2379 0.2621 0.2862 0.31 0.3332 0.3558 0.3775 0.398 0.4173 0.435 0.4511 0.4652 0.4772 0.4869 0.494 0.4985 0.5 0.4985 0.494 0.4869 0.4772 0.4652 0.4511 0.435 0.4173 0.398 0.3775 0.3558 0.3332 0.31 0.2862 0.2621 0.2379 0.2138 0.19 0.1668 0.1442 0.1225 0.102 0.08271 0.06497 0.04894 0.03483 0.02283 0.01314 0.005975 0.001527 0
0 8.392e-06 6.713e-05 0.0002266 0.0005371 0.001049 0.001813 0.002878 0.004297 0.006118 0.008392 0.01117 0.0145 0.01844 0.02303 0.02832 0.03437 0.04123 0.04894 0.05756 0.06713 0.07772 0.08936 0.1021 0.116 0.1311 0.1475 0.1652 0.1842 0.2047 0.2266 0.25 0.2749 0.301 0.328 0.3555 0.3831 0.4106 0.4374 0.4634 0.4881 0.5112 0.5324 0.5512 0.5674 0.5805 0.5902 0.5963 0.5982 0.5958 0.5885 0.5761 0.5582 0.5345 0.5046 0.4681 0.4248 0.3741 0.3159 0.2498 0.1753 0.09215 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.357e-05 0.0002685 0.0009063 0.002148 0.004196 0.007251 0.01151 0.01719 0.02447 0.03357 0.04468 0.058 0.07375 0.09211 0.1133 0.1375 0.1649 0.1958 0.2302 0.2685 0.3109 0.3574 0.4084 0.464 0.5245 0.59 0.6607 0.7369 0.8187 0.9063 1
1 0.9048 0.8159 0.733 0.6559 0.5844 0.5183 0.4574 0.4015 0.3503 0.3036 0.2613 0.2232 0.1889 0.1583 0.1312 0.1074 0.08672 0.06884 0.0536 0.0408 0.03022 0.02164 0.01487 0.009679 0.005864 0.003212 0.001511 0.0005507 0.000119 4.406e-06 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0.09358 0.1779 0.2532 0.32 0.3786 0.4293 0.4726 0.5089 0.5384 0.5615 0.5787 0.5903 0.5967 0.5982 0.5952 0.588 0.5771 0.5629 0.5456 0.5257 0.5035 0.4794 0.4538 0.427 0.3994 0.3714 0.3433 0.3156 0.2885 0.2625 0.2379 0.2149 0.1934 0.1734 0.1549 0.1377 0.1218 0.1072 0.09382 0.0816 0.07049 0.06044 0.05139 0.04329 0.03609 0.02974 0.02418 0.01936 0.01523 0.01173 0.008811 0.006423 0.004511 0.003022 0.001903 0.001101 0.0005639 0.0002379 7.049e-05 8.811e-06 0
0 0.001577 0.006168 0.01356 0.02354 0.03591 0.05044 0.06692 0.08515 0.1049 0.126 0.1482 0.1713 0.1951 0.2193 0.2439 0.2684 0.2928 0.3169 0.3404 0.363 0.3847 0.4051 0.4242 0.4416 0.4571 0.4706 0.4818 0.4905 0.4965 0.4996 0.4996 0.4965 0.4905 0.4818 0.4706 0.4571 0.4416 0.4242 0.4051 0.3847 0.363 0.3404 0.3169 0.2928 0.2684 0.2439 0.2193 0.1951 0.1713 0.1482 0.126 0.1049 0.08515 0.06692 0.05044 0.03591 0.02354 0.01356 0.006168 0.001577 0
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......@@ -171,7 +171,7 @@
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......
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