Commit 065603a6 authored by Staiger's avatar Staiger
Browse files
parents dd20c1ca d7fda095
......@@ -5,6 +5,13 @@ This tutorial introduces you to the basics what iRODS is and how you do simple d
## Prerequisites
- A user account on an iRODS 4.[1,2].X system
- icommands client, [Installation](http://irods.org/download/)
- If you are following this training on a compute cluster like Anunna (WUR) or Lisa/Cartesius/Snellius (SURF) you will need to load the icommands module. Check for the module and load it:
```sh
[user@login0 ~]$ module avail | grep icommands
irods-icommands/4.2.8-1
[user@login0 ~]$ module load irods-icommands/4.2.8-1
load irods-icommands 4.2.8-1 library and binaries.
```
### Connecting to the iRODS server
First we connect to an iRODS server and authenticate as iRODS user. The user account has to be created by the iRODS admin beforehand, see the following section [Part 02](https://github.com/EUDAT-Training/B2SAFE-B2STAGE-Training/blob/master/02-iRODS-handson-admin.md).
......@@ -335,4 +342,4 @@ iquest attrs
> ```
> ERROR: lsUtil: srcPath /aliceZone/home/alice/put1.txt does not exist or user lacks access permission
> ```
> This is due to the fact, that *bob* has no read rights on the parent collection /aliceZone/home/
\ No newline at end of file
> This is due to the fact, that *bob* has no read rights on the parent collection /aliceZone/home/
......@@ -102,7 +102,7 @@
"from irods.session import iRODSSession\n",
"session = iRODSSession(host='scomp1447.wurnet.nl', \n",
" port=1247, user='irods-user1', \n",
" password='irods-user1', zone='aliceZone', \n",
" password='<your password>', zone='aliceZone', \n",
" **{\"irods_default_hash_scheme\": \"MD5\"})"
]
},
......
......@@ -7,8 +7,12 @@ File | Target audience | Status
<span class="css-truncate css-truncate-target"><a href="/02-iRODS-federation.md" class="js-navigation-open" title="02-iRODS-federation.md">02-iRODS-federation.md</a></span> | sysadmins, technical data stewards
<span class="css-truncate css-truncate-target"><a href="/03-Install-iRODS-resource-server.md" class="js-navigation-open" title="03-Install-iRODS-resource-server.md">03-Install-iRODS-resource-server.md</a></span> | sysadmins
<span class="css-truncate css-truncate-target"><a href="/04-Training-Setup.md" class="js-navigation-open" title="04-Training-Setup.md">04-Training-Setup.md</a></span> | sysadmins, trainers from our team
<span class="css-truncate css-truncate-target"><a href="/05-icommands-for-users.md" class="js-navigation-open" title="05-icommands-for-users.md">05-icommands-for-users.md</a></span> | sysadmins, scientific programmers researchers
<span class="css-truncate css-truncate-target"><a href="/06-icommands-for-admins.md" class="js-navigation-open" title="06-icommands-for-admins.md">05-iRODS-advanced-users.md</a></span>| site admins and researchers
<span class="css-truncate css-truncate-target"><a href="/07-python-API-for-users.md" class="js-navigation-open" title="07-python-API-for-users.md">07-python-API-for-users.md</a></span>| scientific programmers
<span class="css-truncate css-truncate-target"><a href="/05-icommands-for-users.md" class="js-navigation-open" title="05-icommands-for-users.md">05-icommands-for-users.md</a></span> | sysadmins, scientific programmers, researchers
<span class="css-truncate css-truncate-target"><a href="/06-icommands-for-admins.md" class="js-navigation-open" title="06-icommands-for-admins.md">05-iRODS-advanced-users.md</a></span>| technical data stewards, researchers
<span class="css-truncate css-truncate-target"><a href="/07-python-API-for-users.md" class="js-navigation-open" title="07-python-API-for-users.md">07-python-API-for-users.md</a><br><a href="/07-python-API-for-users.ipynb" class="js-navigation-open" title="07-python-API-for-users.ipynb">07-python-API-for-users.ipynb</a></span>| scientific programmers, researchers
<span class="css-truncate css-truncate-target"><a href="/08-Davrods-install.md " class="js-navigation-open" title="08-Davrods-install.md ">08-Davrods-install.md </a></span> | sysadmins
<span class="css-truncate css-truncate-target"><a href="/09-advanced-users.md " class="js-navigation-open" title="09-advanced-users.md ">09-advanced-users.md </a></span> | technical data stewards
\ No newline at end of file
<span class="css-truncate css-truncate-target"><a href="/09-advanced-users.md " class="js-navigation-open" title="09-advanced-users.md ">09-advanced-users.md </a></span> | technical data stewards
<span class="css-truncate css-truncate-target"><a href="/10-SSL-encryption-and-PAM.md " class="js-navigation-open" title="10-SSL-encryption-and-PAM.md ">10-SSL-encryption-and-PAM.md </a></span> | sysadmins
<span class="css-truncate css-truncate-target"><a href="/11-Advanced-rules.md " class="js-navigation-open" title="11-Advanced-rules.md ">11-Advanced-rules.md </a></span> | sysadmins, technical data stewards | in development
<span class="css-truncate css-truncate-target"><a href="/12-S3-resources.md " class="js-navigation-open" title="12-S3-resources.md ">12-S3-resources.md </a></span> | sysadmins
<span class="css-truncate css-truncate-target"><a href="/13-HPC-RDM-Training " class="js-navigation-open" title=" 13-HPC-RDM-Training "> 13-HPC-RDM-Training </a></span> | scientific programmers, data stewards
......@@ -114,7 +114,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"Both, bundleResc and demoResc hav been disabled. One cannot put data into them:"
"Both, bundleResc and demoResc have been disabled. One cannot put data into them:"
]
},
{
......@@ -135,7 +135,7 @@
"metadata": {},
"source": [
"## 2. The data tag \"RESOURCE\"\n",
"The metadata key \"RESOURCE\" is reserved for data objects only and can only have the values 'disk', 'archive' and 'dual'."
"The metadata key \"RESOURCE\" is reserved for data objects only and can only have the values 'disk', 'archive' and 'dual'. It moves the data objects' bitstreams to the respective data resource in iRODS."
]
},
{
......
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