Commit 56a58e0e authored by Nijsse, Bart's avatar Nijsse, Bart
Browse files

add bbmap log file to output


Former-commit-id: 9549d70e4c99501aa739de5c9e7e5c2bb120e28c [formerly 803f0c97]
Former-commit-id: 2c1ce9641563e04a58c9d543e14bf8af0dc55b93
parent e4442f45
......@@ -285,7 +285,7 @@ steps:
run: ../expressions/files_to_folder.cwl
in:
files:
source: [fastqc_illumina_before/html_files, fastqc_illumina_before/zip_files, fastqc_illumina_after/html_files, fastqc_illumina_after/zip_files, fastp/html_report, fastp/json_report, reference_filter_illumina/stats, reference_filter_illumina/covstats, illumina_quality_kraken2/sample_report, illumina_quality_kraken2_krona/krona_html, phix_filter/summary, rrna_filter/summary]
source: [fastqc_illumina_before/html_files, fastqc_illumina_before/zip_files, fastqc_illumina_after/html_files, fastqc_illumina_after/zip_files, fastp/html_report, fastp/json_report, reference_filter_illumina/stats, reference_filter_illumina/covstats, reference_filter_illumina/log, illumina_quality_kraken2/sample_report, illumina_quality_kraken2_krona/krona_html, phix_filter/summary, rrna_filter/summary]
linkMerge: merge_flattened
pickValue: all_non_null
step: step
......
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