Commits · 3db508b471b946be6c52949617f83ed30ee7b6e7 · UNLOCK / cwl

21 Apr, 2022 3 commits
- naming fix · 3db508b4
  Nijsse, Bart authored Apr 21, 2022
  
  3db508b4
- labels and naming · 09868055
  Nijsse, Bart authored Apr 21, 2022
  
  09868055
- ngtax and picrust fixes · 49710b22
  Jasper Koehorst authored Apr 21, 2022
  
  49710b22
19 Apr, 2022 1 commit

Jasper Koehorst authored Apr 19, 2022


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d944d61d

18 Apr, 2022 3 commits

add pilon memory usage option · 1ccc2ffc

Nijsse, Bart authored Apr 18, 2022


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1ccc2ffc

add bbmap log file to output · 56a58e0e

Nijsse, Bart authored Apr 18, 2022


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56a58e0e

added memory option · e4442f45

Nijsse, Bart authored Apr 18, 2022


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e4442f45

15 Apr, 2022 15 commits

better step naming · d82c1860

Nijsse, Bart authored Apr 15, 2022


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d82c1860

markup · 5418543b

Nijsse, Bart authored Apr 15, 2022


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5418543b

change kraken.cwl version and busco fix · f4ba6c1c

Nijsse, Bart authored Apr 15, 2022


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f4ba6c1c

busco folder fix · 29498711

Nijsse, Bart authored Apr 15, 2022


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29498711

add kraken2+krona and busco fix · c7ff95b6

Nijsse, Bart authored Apr 15, 2022


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c7ff95b6

add krona, changed kraken2.cwl version · 96466d27

Nijsse, Bart authored Apr 15, 2022


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96466d27

moved to cwl/kraken2 · 871d5e84

Nijsse, Bart authored Apr 15, 2022


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871d5e84

fastqc zipfiles output, step naming · 6c224488

Nijsse, Bart authored Apr 15, 2022


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6c224488

added illumina kraken2 post filter, step naming · 9c9b9e36

Nijsse, Bart authored Apr 15, 2022


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9c9b9e36

added busco and changed step naming · 26461a2a

Nijsse, Bart authored Apr 15, 2022


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26461a2a

changes/simplified names of the steps a bit · 1cc28278

Nijsse, Bart authored Apr 15, 2022


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1cc28278

fastqc zipfiles and naming · 19d2dc2a

Nijsse, Bart authored Apr 15, 2022


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19d2dc2a

zip files as output for multiqc · 1d30cd60

Nijsse, Bart authored Apr 15, 2022


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1d30cd60

always complete succes even when busco fails · d33c76e6

Nijsse, Bart authored Apr 15, 2022


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d33c76e6

obsolete, reduced and moved to the binning workflow · 0e68ee27

Nijsse, Bart authored Apr 15, 2022


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0e68ee27

13 Apr, 2022 6 commits

fastq input strings · deff1c75

Nijsse, Bart authored Apr 13, 2022


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deff1c75

fastq input strings · 9266b981

Nijsse, Bart authored Apr 13, 2022


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9266b981

naming and fastq input strings · 02794e3d

Nijsse, Bart authored Apr 13, 2022


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02794e3d

added stdErr log output · 23bd6143

Nijsse, Bart authored Apr 13, 2022


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23bd6143

output naming · e5b7d7bf

Nijsse, Bart authored Apr 13, 2022


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e5b7d7bf

string file paths as input · ea9ecc3e

Nijsse, Bart authored Apr 13, 2022


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ea9ecc3e

12 Apr, 2022 2 commits

Revert "Change input to strings + more clear naming of steps and output." · 757f0510

Nijsse, Bart authored Apr 12, 2022

This reverts commit 884d2b12.


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757f0510

Change input to strings + more clear naming of steps and output. · 2cfff4ed

Nijsse, Bart authored Apr 12, 2022


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2cfff4ed

11 Apr, 2022 1 commit

file rename, mapped/unmapped option · e0bd223d

Nijsse, Bart authored Apr 11, 2022


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e0bd223d

08 Apr, 2022 9 commits

obsolete · e48ede0d

Nijsse, Bart authored Apr 08, 2022


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e48ede0d

obsolete · 48c731b5

Nijsse, Bart authored Apr 08, 2022


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48c731b5

param rename · b4fb63d9

Nijsse, Bart authored Apr 08, 2022


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b4fb63d9

removed bbmap rpkm output · 1294c483

Nijsse, Bart authored Apr 08, 2022


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1294c483

output mapped or unmapped reads · 96771432

Nijsse, Bart authored Apr 08, 2022


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deduplicate reads and use mapped or unmapped reads · c4384e3c

Nijsse, Bart authored Apr 08, 2022


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param rename · 630efb61

Nijsse, Bart authored Apr 08, 2022


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630efb61

deduplicate reads and use mapped or unmapped reads · c53f7e0d

Nijsse, Bart authored Apr 08, 2022


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c53f7e0d

deduplicate reads and use mapped or unmapped reads · 1a194c15

Nijsse, Bart authored Apr 08, 2022


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