Commit 544d3e3e authored by Jasper Koehorst's avatar Jasper Koehorst
Browse files

container image update

parent 599cce86
......@@ -273,7 +273,7 @@ public class Kubernetes {
// Defines the docker container
V1Container containerItem = new V1Container();
containerItem.name(UUID.randomUUID().toString());
containerItem.image("docker-registry.wur.nl/unlock/docker");
containerItem.image("docker-registry.wur.nl/unlock/docker:kubernetes");
// Set path environment through rancher environment variable using the envFrom object
// Project (unlock) > Resources > Config > Key / Value environment
......
......@@ -8,13 +8,13 @@ import java.util.concurrent.TimeUnit;
public class Amplicon {
String referenceDB = "/unlock/references/databases/Silva/SILVA_138.1_SSURef_tax_silva.fasta.gz";
String project = "P_TKI_BO3B"; // "P_RIVM";
String project = "P_RIVM"; // "P_TKI_BO3B"; //
String investigation = "%";
String study = "%"; // SRP223742
String study = "S_DRP005906"; // "%"; //
String observationUnit = "%";
String assay = "%";
String limit = "100";
String[] ngtaxReadLength = {"100"};
String limit = "2";
String[] ngtaxReadLength = {"70","100","120"};
private String reset = "-reset";
// Performing the NGTAX workflow test
......@@ -38,10 +38,10 @@ public class Amplicon {
"-memory", "6000",
"-threads", "2",
"-debug",
// "-nomock"
"-nomock"
};
App.main(args);
// runKubernetes();
// App.main(args);
runKubernetes();
}
return;
} catch (Exception e) {
......
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