checks for hidden files

src/main/java/nl/munlock/irods/Search.java

@@ -91,9 +91,12 @@ public class Search {
         for (String path : paths) {
             filePathNumber = filePathNumber + 1;
             System.out.print(filePathNumber + "\r");
-            Domain domainTemp = new Domain("file://" + "." + path);
-            domain.getRDFSimpleCon().getModel().add(domainTemp.getRDFSimpleCon().getModel());
-            domainTemp.close();
+            System.err.println(path);
+            if (!new File(path).isHidden()) {
+                Domain domainTemp = new Domain("file://" + "." + path);
+                domain.getRDFSimpleCon().getModel().add(domainTemp.getRDFSimpleCon().getModel());
+                domainTemp.close();
+            }
         }
 
         Iterable<ResultLine> resultLines = domain.getRDFSimpleCon().runQuery("getAssays.txt", true);