added argument on what to synchronize

sync.sh

@@ -8,31 +8,83 @@
 #============================================================================
 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
 
+usage() { echo "Usage: $0 [-c|--cwl] [-r|--references] [-i|--infrastructure] [-a|--all]" 1>&2; exit 1; }
+
+vars=$(getopt -o c:r:i:a: --long cwl:,references:,infrastructure:,all:)
 
 #============================================================================
-# Pull from iRODS
+# KUBERNETES JOBS
 #============================================================================
 
-# irsync -r i:/tempZone/Infrastructure /unlock/
-
 # Clean up finished sync pods
 kubectl get pods --namespace='unlock' | grep munlock-sync | grep Completed | awk '{print "kubectl -n unlock delete pod "$1}' | sh
-
 # Get all possible nodes
 kubectl get nodes -l node-role.kubernetes.io/worker=true | grep -v "SchedulingDisabled" | awk '{print $1}' | grep -v NAME > $DIR/nodes.txt
 
-# For each node perform the sync
-while read node; do
-  echo "$node"
-  sed "s/HOSTNAME/$node/g" $DIR/template_sync_cwl.yaml > $DIR/$node\_cwl.yaml
-  sed "s/HOSTNAME/$node/g" $DIR/template_sync_infrastructure.yaml > $DIR/$node\_infrastructure.yaml
-  sed "s/HOSTNAME/$node/g" $DIR/template_sync_references.yaml > $DIR/$node\_references.yaml
-  kubectl apply -f $DIR/$node\_cwl.yaml
-  kubectl apply -f $DIR/$node\_infrastructure.yaml
-  kubectl apply -f $DIR/$node\_references.yaml
-  
-  # Cleanup
-  rm $DIR/$node\_cwl.yaml $DIR/$node\_infrastructure.yaml $DIR/$node\_references.yaml
-
-done < $DIR/nodes.txt
 
+runall=false
+if [ "$1" == "" ]; then
+    runall=true
+fi
+for opt; do     
+  if [[ $opt == "-a" || $opt == "--all" ]]; then
+    runall=true
+  fi
+done
+if $runall; then
+
+  while read node; do
+    sed "s/HOSTNAME/$node/g" $DIR/template_sync_cwl.yaml > $DIR/$node\_cwl.yaml
+    sed "s/HOSTNAME/$node/g" $DIR/template_sync_infrastructure.yaml > $DIR/$node\_infrastructure.yaml
+    sed "s/HOSTNAME/$node/g" $DIR/template_sync_references.yaml > $DIR/$node\_references.yaml
+    kubectl apply -f $DIR/$node\_cwl.yaml
+    kubectl apply -f $DIR/$node\_infrastructure.yaml
+    kubectl apply -f $DIR/$node\_references.yaml
+   
+    # Cleanup
+    rm $DIR/$node\_cwl.yaml $DIR/$node\_infrastructure.yaml $DIR/$node\_references.yaml
+
+  done < $DIR/nodes.txt
+
+  exit 1
+fi
+
+
+# If not all sent job any given option
+for opt; do
+  case "$opt" in
+    -c|--cwl)
+
+      while read node; do
+        sed "s/HOSTNAME/$node/g" $DIR/template_sync_cwl.yaml > $DIR/$node\_cwl.yaml
+        kubectl apply -f $DIR/$node\_cwl.yaml
+        # Cleanup
+        rm $DIR/$node\_cwl.yaml
+      done < $DIR/nodes.txt
+
+      ;;      
+    -r|--references)
+
+      while read node; do
+        sed "s/HOSTNAME/$node/g" $DIR/template_sync_references.yaml > $DIR/$node\_references.yaml
+        kubectl apply -f $DIR/$node\_references.yaml
+        # Cleanup
+        rm $DIR/$node\_references.yaml
+      done < $DIR/nodes.txt
+
+      ;;      
+    -i|--infrastructure)
+
+      while read node; do
+        sed "s/HOSTNAME/$node/g" $DIR/template_sync_infrastructure.yaml > $DIR/$node\_infrastructure.yaml
+        kubectl apply -f $DIR/$node\_infrastructure.yaml             
+        # Cleanup
+        rm $DIR/$node\_references.yaml
+      done < $DIR/nodes.txt
+
+      ;;
+    *)
+      usage
+
+  esac
+done
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