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PanTools, WUR Bioinformatics

Repository for Python raster GIS library with low memory requirements

HPC Deployment toolbox used at WUR for Anunna

A simple template repository for python projects

Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.

The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.

Arabidopsis eQTL analysis platform

A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)

Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.

Multi Reclass Tool for geospatial rasters.

CNN methods that estimate the diameter of the crop, even when it's occluded.

BAIT - a tool for breakpoint analysis and inference of time series

video machinelearning using yolov3 on windows 10

This project is containing some code and data for the tutorial on 3D plant phenotyping at the Summerschool on Application of Machine Learning in Plant Sciences, 12–16 September 2022, Einsiedeln, Switzerland.

Multiple protein structure alignment and feature extraction suite

This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.