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R package for (e)QTL mapping

Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index, a modified Domain Duplicate Score and the Adjacency Index)

Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.

The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.

Arabidopsis eQTL analysis platform

flow accumulation model made in R (and partly still in bash).

Several data files associated with the analysis of SMILES strings from the MIBiG database

Script for the published paper doi:10.1186/s12864-015-1733-8

ibrowser

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard index, a modified Domain Duplicate Score and the Goodman-Kruskal gamma function)

AMOS is a collection of tools for genome assembly