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NCBI taxonomy dump parser

project for testing code and messing around

The code used in the MSc thesis "Learning prokaryote promoter-protein grammar via deep learning".

Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.

Visualize genes in a GenBank file as arrows in SVG format.