Explore projects

Family-based estimation of polyploid haplotypes using short sequence reads

This Gitlab project contains the scripts used for the generation of the ~5.000.000 unique barcode IDs, used for the construction of the ID tags. A description of the pipeline dataflow in PDF-format, as well as input- and output data, are included

Scripts to extract host capped leader sequences from Nicotiana benthamiana and TSWV

TrakCoreLib is a Python library that provide core modules for image processing, camera model and calibration, 2d and 3d tracking, etc..

Snakemake pipeline for the MAKER genome annotation tool

CIHEAM course material

ibrowser

Haplotype estimation tool for polyploids using NGS data of related individuals

B4F individual tracking for dairy cattle. Created on April, 15, 2021 by Ines Adriaens

Scripts used in my Master thesis project on calling homopolymers in nanopore data using neural networks.

Tools for working with parcel-based satellite timeseries from groenmonitor.nl

Main aim is to provide tools for tracing flooding events in the Netherlands. The emphasis is on water damage caused by large amounts of rain.

A collaborative space of the EJP Soil project for disseminating soil datasets