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PanTools, WUR Bioinformatics

HPC Deployment toolbox used at WUR for Anunna

Repository for Python raster GIS library with low memory requirements

A simple template repository for python projects

A package that prepare video recordings to be used by deeplabcut (simple 2D/3D tracking, cropping and stitching). Then use deeplabcut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

This is an adaptation of CloudSPAdes which uses taxonomical annotation of reads additionally to linked reads.

Application and tools for data analytics and visualizations

The script focuses on assessing tree vitality trends in urban areas of the Netherlands using high-resolution satellite data and vegetation indices. It employs tree segmentation, trend analysis with weighted linear regression, and classification based on slope values. The methodology enables scalable monitoring of tree health and stress, providing valuable insights for urban forestry management and planning.

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Postprocessing --

CNN methods that estimate the diameter of the crop, even when it's occluded.

Multi Reclass Tool for geospatial rasters.