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PanTools, WUR Bioinformatics

Repository for Python raster GIS library with low memory requirements

HPC Deployment toolbox used at WUR for Anunna

A simple template repository for python projects

The KB Robotics application which combines all the different modules.

ACT project for the masters programme Geo-Information Science at Wageningen University & Research, conducted for the Dutch Ministry of Defence

The script focuses on assessing tree vitality trends in urban areas of the Netherlands using high-resolution satellite data and vegetation indices. It employs tree segmentation, trend analysis with weighted linear regression, and classification based on slope values. The methodology enables scalable monitoring of tree health and stress, providing valuable insights for urban forestry management and planning.

A package that prepare video recordings to be used by deeplabcut (simple 2D/3D tracking, cropping and stitching). Then use deeplabcut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.

Postprocessing --

CNN methods that estimate the diameter of the crop, even when it's occluded.

Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.

The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.

Arabidopsis eQTL analysis platform

A script for retrieval of SMILES chemical data of compounds produced by Biosynthetic Gene Clusters. Data is gathered from the MIBiG repository (single package with all entries in JSON format)