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This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.
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Himbeeck, Robbert van / nemmap
MIT Licensenemmap is a single-command pipeline to process bacterial (full 16S) or fungal (full ITS) reads obtained by Nanopore sequencing. This pipeline is developed and intended for internal use by the Laboratory of Nematology (WUR).
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ISRIC / SoilGrids / SoilGrids
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Schipstal, Job van / CADD_pipeline_v2
GNU General Public License v3.0 or laterAn automated pipeline to generate CADD scores.
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Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.
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Blok, Pieter / SizeCNN
Apache License 2.0CNN methods that estimate the diameter of the crop, even when it's occluded.
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Wijfjes, Raul / hecaton
GNU Affero General Public License v3.0Reliable CNV detection in plant genomes
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NEmatology RNA Variant Analysis and Calling pipeline = NERVAC
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bioinformatics / hecaton
GNU Affero General Public License v3.0Code repository for Hecaton, a tool for CNV detection in plants
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