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This repository contains a couple of scripts to make living with the WUR git repo a bit easier. Feel free to add code, by forking, coding and creating a merge request.
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Contains Instructions how to set up iRODS for sysadmins and training material for different user goups.
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Blok, Pieter / SizeCNN
Apache License 2.0CNN methods that estimate the diameter of the crop, even when it's occluded.
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ISRIC / SoilGrids / SoilGrids
GNU General Public License v3.0 onlyUpdatedUpdated -
WBVR_PathogenOmics / Rational_designed_microbiome
GNU General Public License v3.0 or laterSeries of scripts developed part of the Rationally designed microbiomes project.
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Pronk, Lotte / Whokaryote
GNU Affero General Public License v3.0Updated -
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Impellizzeri, Cipo / Geoscripting Exercise 2
Creative Commons Zero v1.0 UniversalExercise 2 Stijn and Cipo (Marco B. - If running makes no sense)
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Willemsen, Johan / Happy-haplotype-assembly
GNU General Public License v3.0 onlyHappy - Haplotype assembly using Next-generation Sequencing (NGS) reads.
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Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.
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