Explore projects

Pipeline to rank multiple putative BGC assemblies as those generated by biosyntheticSpades when there are multiple possible paths in the assembly graph. Code is derived by an early version of BiG-SCAPE [https://git.wur.nl/medema-group/BiG-SCAPE]

Bacterial genome mining tool for gene clusters related to rhizosphere competence. Web server available at https://rhizosmash.bioinformatics.nl

Workflow repository for the HYDRA-EO project, hosting processing pipelines, scripts, and documentation supporting hybrid machine learning and radiative transfer modelling for crop stress, pests, and disease monitoring using multi-sensor Earth Observation data.

practice_git

flow accumulation model made in R (and partly still in bash).

Leaf conductance model for d13C, d18O and D17O