Explore projects

Common Workflow Language pipeline for Nanopore sequencing data

Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.

FLiTrak3D (or FLIT for “FLight Insect Tracker”) is a Python package that prepare video recordings to be used by DeepLabCut (simple 2D/3D tracking, cropping and stitching). Then use DeepLabCut to estimate the 2D coordinates of various bodyparts of a flying insect and fit a 3D skeleton to these 2D coordinates

This project describes the implementation of a Next generation risk assessment model (NGRA). It consists in using cold tolerance genomic data to characterize the risk of humans to get foodborne campylobacteriosis via chicken and salad consumption.

Reliable CNV detection in plant genomes

Code for Matchmaker - A joint structure-molecule framework to predict protein-compound specificity

FOODSOM: food system optimisation model